Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
MSH3P20585 RNU6-735P-201ENST00000410612 107 ntBASIC0.69□□□□□ -2.3
MSH3P20585 RNA5SP220-201ENST00000516298 104 ntBASIC0.69□□□□□ -2.3
MSH3P20585 AC133485.1-201ENST00000567176 124 ntBASIC0.69□□□□□ -2.3
MSH3P20585 AC138907.6-201ENST00000568401 126 ntBASIC0.69□□□□□ -2.3
MSH3P20585 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
MSH3P20585 AC105081.1-201ENST00000617727 106 ntBASIC0.69□□□□□ -2.3
MSH3P20585 AL157777.2-201ENST00000258070 137 ntBASIC0.68□□□□□ -2.3
MSH3P20585 SNORD115-19-201ENST00000363098 82 ntBASIC0.68□□□□□ -2.3
MSH3P20585 SNORD115-18-201ENST00000363293 82 ntBASIC0.68□□□□□ -2.3
MSH3P20585 SNORD115-17-201ENST00000364612 82 ntBASIC0.68□□□□□ -2.3
MSH3P20585 Y_RNA.346-201ENST00000365385 112 ntBASIC0.68□□□□□ -2.3
MSH3P20585 Y_RNA.525-201ENST00000384570 113 ntBASIC0.68□□□□□ -2.3
MSH3P20585 RNU6-959P-201ENST00000384671 107 ntBASIC0.68□□□□□ -2.3
MSH3P20585 MIR508-201ENST00000384857 115 ntBASIC0.68□□□□□ -2.3
MSH3P20585 MIR206-201ENST00000384872 86 ntBASIC0.68□□□□□ -2.3
MSH3P20585 MIR548J-201ENST00000408833 112 ntBASIC0.68□□□□□ -2.3
MSH3P20585 RNU6-659P-201ENST00000516454 104 ntBASIC0.68□□□□□ -2.3
MSH3P20585 SNORA25.16-201ENST00000516741 121 ntBASIC0.68□□□□□ -2.3
MSH3P20585 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
MSH3P20585 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
MSH3P20585 RNU6-1321P-201ENST00000390905 107 ntBASIC0.67□□□□□ -2.3
MSH3P20585 RNU7-2P-201ENST00000516096 62 ntBASIC0.67□□□□□ -2.3
MSH3P20585 RNU6-765P-201ENST00000516916 99 ntBASIC0.67□□□□□ -2.3
MSH3P20585 AC138749.4-201ENST00000563970 127 ntBASIC0.67□□□□□ -2.3
MSH3P20585 MIR151B-201ENST00000584249 96 ntBASIC0.67□□□□□ -2.3
MSH3P20585 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.67□□□□□ -2.3
MSH3P20585 MIR3914-2-201ENST00000637339 95 ntBASIC0.67□□□□□ -2.3
MSH3P20585 Y_RNA.116-201ENST00000363292 103 ntBASIC0.66□□□□□ -2.3
MSH3P20585 RNA5SP133-201ENST00000363368 119 ntBASIC0.66□□□□□ -2.3
MSH3P20585 RNY1P2-201ENST00000364820 117 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD115-35-201ENST00000365122 82 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD116-14-201ENST00000383894 92 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD116-17-201ENST00000383929 92 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD116-15-201ENST00000384445 92 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORA72.6-201ENST00000384520 129 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD116-19-201ENST00000384729 92 ntBASIC0.66□□□□□ -2.3
MSH3P20585 MIR548D2-201ENST00000384955 97 ntBASIC0.66□□□□□ -2.3
MSH3P20585 SNORD100-201ENST00000408573 76 ntBASIC0.66□□□□□ -2.3
MSH3P20585 AC002350.1-201ENST00000490759 375 ntBASIC0.66□□□□□ -2.3
MSH3P20585 RNU6-448P-201ENST00000517052 107 ntBASIC0.66□□□□□ -2.3
MSH3P20585 AP003327.1-201ENST00000529684 127 ntBASIC0.66□□□□□ -2.3
MSH3P20585 MIR3910-1-201ENST00000580936 111 ntBASIC0.66□□□□□ -2.3
MSH3P20585 Y_RNA.773-201ENST00000607168 90 ntBASIC0.66□□□□□ -2.3
MSH3P20585 U6.109-201ENST00000636749 87 ntBASIC0.66□□□□□ -2.3
MSH3P20585 RNY4P6-201ENST00000363667 96 ntBASIC0.65□□□□□ -2.31
MSH3P20585 RNU6-42P-201ENST00000384165 107 ntBASIC0.65□□□□□ -2.31
MSH3P20585 Y_RNA.448-201ENST00000384185 108 ntBASIC0.65□□□□□ -2.31
MSH3P20585 RNU6-1307P-201ENST00000391012 103 ntBASIC0.65□□□□□ -2.31
MSH3P20585 RNU6-1194P-201ENST00000516208 104 ntBASIC0.65□□□□□ -2.31
MSH3P20585 MIR3612-201ENST00000579753 87 ntBASIC0.65□□□□□ -2.31
MSH3P20585 MIR6734-201ENST00000621166 68 ntBASIC0.65□□□□□ -2.31
MSH3P20585 Y_RNA.98-201ENST00000363109 102 ntBASIC0.64□□□□□ -2.31
MSH3P20585 RNU4-58P-201ENST00000363192 141 ntBASIC0.64□□□□□ -2.31
MSH3P20585 Y_RNA.119-201ENST00000363301 96 ntBASIC0.64□□□□□ -2.31
MSH3P20585 Y_RNA.127-201ENST00000363386 109 ntBASIC0.64□□□□□ -2.31
MSH3P20585 RNU6-110P-201ENST00000384508 104 ntBASIC0.64□□□□□ -2.31
MSH3P20585 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.64□□□□□ -2.31
MSH3P20585 RNU7-48P-201ENST00000458875 63 ntBASIC0.64□□□□□ -2.31
MSH3P20585 RNU6-531P-201ENST00000516694 104 ntBASIC0.64□□□□□ -2.31
MSH3P20585 Y_RNA.328-201ENST00000365208 113 ntBASIC0.63□□□□□ -2.31
MSH3P20585 Y_RNA.344-201ENST00000365381 112 ntBASIC0.63□□□□□ -2.31
MSH3P20585 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
MSH3P20585 RNU6-1333P-201ENST00000516162 93 ntBASIC0.63□□□□□ -2.31
MSH3P20585 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.63□□□□□ -2.31
MSH3P20585 DEFB131E-201ENST00000532329 154 ntBASIC0.63□□□□□ -2.31
MSH3P20585 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
MSH3P20585 MIR1255B1-201ENST00000636325 63 ntBASIC0.63□□□□□ -2.31
MSH3P20585 U6.95-201ENST00000636931 70 ntBASIC0.63□□□□□ -2.31
MSH3P20585 AC132825.6-201ENST00000638861 357 ntBASIC0.63□□□□□ -2.31
MSH3P20585 MIR18A-201ENST00000362310 71 ntBASIC0.62□□□□□ -2.31
MSH3P20585 RNA5SP222-201ENST00000411039 105 ntBASIC0.62□□□□□ -2.31
MSH3P20585 RNU6-521P-201ENST00000516663 105 ntBASIC0.62□□□□□ -2.31
MSH3P20585 RNU6-1223P-201ENST00000517124 104 ntBASIC0.62□□□□□ -2.31
MSH3P20585 MTND5P34-201ENST00000568888 325 ntBASIC0.62□□□□□ -2.31
MSH3P20585 RNA5SP117-201ENST00000365294 118 ntBASIC0.61□□□□□ -2.31
MSH3P20585 RNU4-45P-201ENST00000365469 141 ntBASIC0.61□□□□□ -2.31
MSH3P20585 RNU6-429P-201ENST00000384582 108 ntBASIC0.61□□□□□ -2.31
MSH3P20585 Y_RNA.536-201ENST00000384621 113 ntBASIC0.61□□□□□ -2.31
MSH3P20585 Y_RNA.563-201ENST00000384707 108 ntBASIC0.61□□□□□ -2.31
MSH3P20585 Y_RNA.649-201ENST00000459077 103 ntBASIC0.61□□□□□ -2.31
MSH3P20585 snoU13.18-201ENST00000459483 104 ntBASIC0.61□□□□□ -2.31
MSH3P20585 MIR5000-201ENST00000577717 103 ntBASIC0.61□□□□□ -2.31
MSH3P20585 MIR376B-201ENST00000614515 100 ntBASIC0.61□□□□□ -2.31
MSH3P20585 AP001362.1-201ENST00000625165 124 ntBASIC0.61□□□□□ -2.31
MSH3P20585 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.6□□□□□ -2.31
MSH3P20585 RNU6-363P-201ENST00000362895 105 ntBASIC0.6□□□□□ -2.31
MSH3P20585 Y_RNA.261-201ENST00000364631 102 ntBASIC0.6□□□□□ -2.31
MSH3P20585 RNU6-865P-201ENST00000364772 107 ntBASIC0.6□□□□□ -2.31
MSH3P20585 Y_RNA.353-201ENST00000365440 108 ntBASIC0.6□□□□□ -2.31
MSH3P20585 Y_RNA.362-201ENST00000365518 110 ntBASIC0.6□□□□□ -2.31
MSH3P20585 RNU6-291P-201ENST00000384720 107 ntBASIC0.6□□□□□ -2.31
MSH3P20585 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.6□□□□□ -2.31
MSH3P20585 AC008267.6-201ENST00000441664 139 ntBASIC0.6□□□□□ -2.31
MSH3P20585 SNORD33.1-201ENST00000516213 88 ntBASIC0.6□□□□□ -2.31
MSH3P20585 Y_RNA.697-201ENST00000516776 113 ntBASIC0.6□□□□□ -2.31
MSH3P20585 MIR4679-2-201ENST00000578358 77 ntBASIC0.6□□□□□ -2.31
MSH3P20585 AL365222.1-201ENST00000614661 98 ntBASIC0.6□□□□□ -2.31
MSH3P20585 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.6□□□□□ -2.31
MSH3P20585 uc_338.16-201ENST00000621804 95 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 212.8 ms