Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 Y_RNA.378-201ENST00000365652 113 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 RNU6-1040P-201ENST00000383974 107 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 RNA5SP147-201ENST00000516493 109 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 AC097639.2-201ENST00000603159 172 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 AC087741.2-201ENST00000619415 172 ntBASIC-1.06□□□□□ -2.58
COL6A3P12111 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 Y_RNA.304-201ENST00000365011 112 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU6-144P-201ENST00000383951 107 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 AL035461.1-201ENST00000421490 332 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU5F-7P-201ENST00000363696 115 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU6-260P-201ENST00000384092 107 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU6-20P-201ENST00000384106 107 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU6-864P-201ENST00000516256 108 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 AC060780.3-201ENST00000589464 80 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 AC103591.3-201ENST00000608684 209 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 AL512427.1-201ENST00000618593 349 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 U6.96-201ENST00000636425 70 ntBASIC-1.07□□□□□ -2.58
COL6A3P12111 RNU6-181P-201ENST00000363225 107 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-774P-201ENST00000363238 107 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNY4P34-201ENST00000364779 95 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU4-17P-201ENST00000365598 141 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-935P-201ENST00000410371 100 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-383P-201ENST00000410864 94 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 MIR1270-201ENST00000459320 83 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-445P-201ENST00000516949 107 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 MIR3682-201ENST00000581338 84 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 MIR4696-201ENST00000581431 70 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 MIR5197-201ENST00000583721 112 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 SNORD38.2-201ENST00000384470 69 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNA5SP144-201ENST00000410846 116 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-1.08□□□□□ -2.58
COL6A3P12111 AC083904.1-201ENST00000487828 231 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-311P-201ENST00000516224 102 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 DLEU2_5.1-201ENST00000615567 84 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 AC099654.13-201ENST00000639774 207 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-801P-201ENST00000364087 105 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 SNORA19.1-201ENST00000410656 129 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.08□□□□□ -2.58
COL6A3P12111 MTND2P30-201ENST00000456663 382 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU7-180P-201ENST00000459240 63 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-408P-201ENST00000515910 100 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 MRPS36P3-201ENST00000519284 130 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 AL121895.2-201ENST00000619558 447 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 AP001362.1-201ENST00000625165 124 ntBASIC-1.08□□□□□ -2.58
COL6A3P12111 RNU6-879P-201ENST00000364328 108 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 MIR521-2-201ENST00000384818 87 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 MTND3P1-201ENST00000441336 220 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 RNU7-88P-201ENST00000458752 63 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-1.09□□□□□ -2.58
COL6A3P12111 SNORD77.4-201ENST00000516158 81 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 RNU6-911P-201ENST00000516523 104 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-1.09□□□□□ -2.58
COL6A3P12111 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.09□□□□□ -2.58
COL6A3P12111 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-1.09□□□□□ -2.58
COL6A3P12111 MIR4999-201ENST00000585029 91 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 AC009779.6-201ENST00000603972 165 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 RNU6-254P-201ENST00000363377 107 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 SNORD115-22-201ENST00000364456 82 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 MIR451A-201ENST00000385059 72 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 MTND3P16-201ENST00000452205 344 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 RNU6-191P-201ENST00000516295 94 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 RNU2-31P-201ENST00000516954 155 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 MIR4536-1-201ENST00000583537 88 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 AC024933.1-201ENST00000608472 348 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 AC007485.1-201ENST00000616755 206 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 TRDV1-202ENST00000621643 102 ntBASIC-1.09□□□□□ -2.58
COL6A3P12111 Y_RNA.222-201ENST00000364264 102 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 RNU5E-4P-201ENST00000364931 120 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.1□□□□□ -2.58
COL6A3P12111 ELOCP20-201ENST00000422460 345 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 SNRPGP8-201ENST00000454064 226 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 RNA5SP401-201ENST00000515920 127 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 RNU6-1192P-201ENST00000612197 107 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 RNU6-489P-201ENST00000618289 107 ntBASIC-1.1□□□□□ -2.58
COL6A3P12111 RNU6-874P-201ENST00000362390 105 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.77-201ENST00000362962 107 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 SNORD27-201ENST00000363981 72 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.380-201ENST00000365663 111 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-1.1□□□□□ -2.59
COL6A3P12111 AC084782.3-201ENST00000612282 578 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 AC048344.4-201ENST00000619744 527 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 RNU6-596P-201ENST00000365395 98 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 SNORD116.1-201ENST00000365628 92 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 PMCHL1-202ENST00000423102 261 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-1.1□□□□□ -2.59
COL6A3P12111 AC107399.1-201ENST00000451226 265 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.691-201ENST00000516611 103 ntBASIC-1.1□□□□□ -2.59
COL6A3P12111 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.11□□□□□ -2.59
COL6A3P12111 RNU6-563P-201ENST00000364872 108 ntBASIC-1.11□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 251.4 ms