Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 RNU6-571P-201ENST00000384128 107 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MIR518B-201ENST00000385127 83 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MIR1302-11-201ENST00000408051 138 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MIR1302-9-201ENST00000408365 138 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MIR1302-10-201ENST00000408734 138 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.81□□□□□ -2.7
TPM1P09493 Y_RNA.681-201ENST00000516445 113 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 SNORA40.17-201ENST00000517256 115 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 AC026407.1-201ENST00000518369 204 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MIR1302-2-201ENST00000607096 138 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 AC084781.2-201ENST00000615568 161 ntBASIC-1.81□□□□□ -2.7
TPM1P09493 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
TPM1P09493 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 SNORD115-25-201ENST00000362619 82 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 RNU6-978P-201ENST00000364371 103 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 AL500527.2-201ENST00000454105 95 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.82□□□□□ -2.7
TPM1P09493 RNU6-138P-201ENST00000515952 107 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 AC090574.1-201ENST00000623186 233 ntBASIC-1.82□□□□□ -2.7
TPM1P09493 RNA5SP368-201ENST00000364298 116 ntBASIC-1.83□□□□□ -2.7
TPM1P09493 AC016907.1-201ENST00000419483 435 ntBASIC-1.83□□□□□ -2.7
TPM1P09493 RNU6-976P-201ENST00000516086 111 ntBASIC-1.83□□□□□ -2.7
TPM1P09493 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.83□□□□□ -2.7
TPM1P09493 AC007012.1-201ENST00000567192 175 ntBASIC-1.83□□□□□ -2.7
TPM1P09493 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.84□□□□□ -2.7
TPM1P09493 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.84□□□□□ -2.7
TPM1P09493 MIR652-201ENST00000385278 98 ntBASIC-1.84□□□□□ -2.7
TPM1P09493 RNU6-287P-201ENST00000516230 98 ntBASIC-1.84□□□□□ -2.7
TPM1P09493 AC145423.2-201ENST00000610631 239 ntBASIC-1.84□□□□□ -2.7
TPM1P09493 uc_338.19-201ENST00000616808 99 ntBASIC-1.85□□□□□ -2.71
TPM1P09493 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 SNORA49-201ENST00000386157 136 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 RNU4-69P-201ENST00000410677 143 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 SCARNA17-201ENST00000516183 144 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 SNORD22.1-201ENST00000516331 125 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 RNU2-35P-201ENST00000516446 142 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 AC080013.6-201ENST00000606185 215 ntBASIC-1.86□□□□□ -2.71
TPM1P09493 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 MIR517B-201ENST00000385102 67 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 RNU6-121P-201ENST00000410525 99 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.87□□□□□ -2.71
TPM1P09493 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.88□□□□□ -2.71
TPM1P09493 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.88□□□□□ -2.71
TPM1P09493 IGKV1-22-201ENST00000524313 326 ntBASIC-1.88□□□□□ -2.71
TPM1P09493 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.88□□□□□ -2.71
TPM1P09493 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RNU6-973P-201ENST00000364690 107 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RNU6-690P-201ENST00000365242 106 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RNU6-381P-201ENST00000391259 108 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RNU6-277P-201ENST00000516272 106 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.89□□□□□ -2.71
TPM1P09493 MIR4499-201ENST00000584834 69 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 RNU2-4P-201ENST00000606190 192 ntBASIC-1.89□□□□□ -2.71
TPM1P09493 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.9□□□□□ -2.71
TPM1P09493 RNU6-623P-201ENST00000363143 105 ntBASIC-1.9□□□□□ -2.71
TPM1P09493 RNU6-472P-201ENST00000384299 107 ntBASIC-1.9□□□□□ -2.71
TPM1P09493 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.9□□□□□ -2.71
TPM1P09493 AC022137.1-201ENST00000483735 151 ntBASIC-1.9□□□□□ -2.71
TPM1P09493 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.9□□□□□ -2.71
TPM1P09493 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 Y_RNA.416-201ENST00000384014 113 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 SNORD2-201ENST00000459163 69 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 RNU7-2P-201ENST00000516096 62 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 RNU6-850P-201ENST00000516934 103 ntBASIC-1.91□□□□□ -2.72
TPM1P09493 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 MIR516A2-201ENST00000384888 90 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 MIR516A1-201ENST00000385033 90 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 MT-TL1-201ENST00000386347 75 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 AP000533.3-201ENST00000447704 118 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 RNU6-274P-201ENST00000459566 107 ntBASIC-1.92□□□□□ -2.72
TPM1P09493 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 SNORD77B-201ENST00000391112 67 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 RNU6-876P-201ENST00000391295 104 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 MIR376B-201ENST00000614515 100 ntBASIC-1.93□□□□□ -2.72
TPM1P09493 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 SERF1AP1-201ENST00000514575 187 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 MIR5704-201ENST00000584029 77 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 AC009779.6-201ENST00000603972 165 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.94□□□□□ -2.72
TPM1P09493 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.95□□□□□ -2.72
TPM1P09493 RNA5SP25-201ENST00000410815 110 ntBASIC-1.95□□□□□ -2.72
TPM1P09493 AC140658.3-201ENST00000567603 271 ntBASIC-1.95□□□□□ -2.72
TPM1P09493 AC087741.2-201ENST00000619415 172 ntBASIC-1.95□□□□□ -2.72
TPM1P09493 U4.1-201ENST00000620349 87 ntBASIC-1.95□□□□□ -2.72
TPM1P09493 Y_RNA.274-201ENST00000364714 101 ntBASIC-1.96□□□□□ -2.72
TPM1P09493 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.96□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms