Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORA25.16-201ENST00000516741 121 ntBASIC0.47□□□□□ -2.33
HOXC11O43248 RNU6-135P-201ENST00000516769 101 ntBASIC0.47□□□□□ -2.33
HOXC11O43248 AC108081.1-201ENST00000604358 221 ntBASIC0.47□□□□□ -2.33
HOXC11O43248 RNU4-58P-201ENST00000363192 141 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 Y_RNA.536-201ENST00000384621 113 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 RNU6-535P-201ENST00000384722 107 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 AC108059.2-201ENST00000434626 151 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 MIR1270-201ENST00000459320 83 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 AC243829.6-201ENST00000612652 106 ntBASIC0.46□□□□□ -2.34
HOXC11O43248 RNA5SP133-201ENST00000363368 119 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 Y_RNA.298-201ENST00000364960 107 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 MIR518A1-201ENST00000385068 85 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 MIR644A-201ENST00000385262 94 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 SNORA68.3-201ENST00000515906 83 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 RNU6-1194P-201ENST00000516208 104 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 MTND5P41-201ENST00000517498 206 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 MIR1273G-201ENST00000577677 100 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 MIR3671-201ENST00000580455 88 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 AC098479.1-201ENST00000609225 154 ntBASIC0.45□□□□□ -2.34
HOXC11O43248 SNORD114-10-201ENST00000363409 72 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 RNU6-1229P-201ENST00000364295 107 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 RNU6-915P-201ENST00000364943 103 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 VTRNA1-3-201ENST00000365645 89 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 RNU4-69P-201ENST00000410677 143 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
HOXC11O43248 SNORD67.1-201ENST00000516618 108 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 AL359881.1-201ENST00000602916 267 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 AC021753.1-201ENST00000635724 168 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 U6.109-201ENST00000636749 87 ntBASIC0.44□□□□□ -2.34
HOXC11O43248 MIR101-2-201ENST00000362195 79 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 Y_RNA.400-201ENST00000383963 111 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 Y_RNA.555-201ENST00000384673 110 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
HOXC11O43248 SNORD77B-201ENST00000391112 67 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 RNY4P20-201ENST00000516678 93 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 SNORA31.14-201ENST00000516728 116 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 RNU7-137P-201ENST00000516788 62 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 AC022523.2-201ENST00000561045 150 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 MTND5P34-201ENST00000568888 325 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 MIR3121-201ENST00000579680 77 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 MIR548X2-201ENST00000579776 100 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 AL137067.1-201ENST00000615933 120 ntBASIC0.43□□□□□ -2.34
HOXC11O43248 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.43□□□□□ -2.34
HOXC11O43248 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 MIRLET7D-201ENST00000362263 87 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 Y_RNA.32-201ENST00000362589 110 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 SNORA8.2-201ENST00000384372 139 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 RNU6-291P-201ENST00000384720 107 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 MIR569-201ENST00000385228 96 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 Y_RNA.692-201ENST00000516627 105 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 RNU6-531P-201ENST00000516694 104 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 IGKV1-22-201ENST00000524313 326 ntBASIC0.42□□□□□ -2.34
HOXC11O43248 Y_RNA.215-201ENST00000364204 112 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 Y_RNA.420-201ENST00000384043 110 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 RNU6-1104P-201ENST00000384723 104 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 MIRLET7F2-201ENST00000385277 83 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 SNORA25.18-201ENST00000607153 114 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 AC105081.1-201ENST00000617727 106 ntBASIC0.41□□□□□ -2.34
HOXC11O43248 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
HOXC11O43248 RNU6-1099P-201ENST00000363533 107 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 Y_RNA.170-201ENST00000363746 110 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 SNORD18A-201ENST00000363753 72 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 Y_RNA.180-201ENST00000363867 113 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 Y_RNA.294-201ENST00000364916 102 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 AP001328.1-201ENST00000528550 176 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 AC138749.4-201ENST00000563970 127 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 AP001340.1-201ENST00000624405 217 ntBASIC0.4□□□□□ -2.35
HOXC11O43248 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.35
HOXC11O43248 Y_RNA.114-201ENST00000363265 113 ntBASIC0.39□□□□□ -2.35
HOXC11O43248 RNA5SP272-201ENST00000516095 111 ntBASIC0.39□□□□□ -2.35
HOXC11O43248 Y_RNA.119-201ENST00000363301 96 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 RNA5SP325-201ENST00000363756 130 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 Y_RNA.280-201ENST00000364765 112 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 Y_RNA.464-201ENST00000384282 110 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.38□□□□□ -2.35
HOXC11O43248 RNU6-426P-201ENST00000516464 97 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 RNA5SP268-201ENST00000516828 124 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 RNU6-1212P-201ENST00000517023 104 ntBASIC0.38□□□□□ -2.35
HOXC11O43248 MIR330-201ENST00000362196 94 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 RNY1P2-201ENST00000364820 117 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 MIR206-201ENST00000384872 86 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 MT-TI-201ENST00000387365 69 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 RNU6-1321P-201ENST00000390905 107 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 RNU7-200P-201ENST00000516105 62 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 RNU6-255P-201ENST00000516957 105 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 MIR924-201ENST00000638017 53 ntBASIC0.37□□□□□ -2.35
HOXC11O43248 SNORD44.1-201ENST00000363202 61 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 SNORA36.1-201ENST00000363424 132 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 Y_RNA.488-201ENST00000384403 102 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 RNU6-1307P-201ENST00000391012 103 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 RNU6-863P-201ENST00000515989 104 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 RN7SKP19-201ENST00000516016 252 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 MIR4639-201ENST00000584938 69 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 U7.2-201ENST00000607576 63 ntBASIC0.36□□□□□ -2.35
HOXC11O43248 RNA5SP245-201ENST00000364239 121 ntBASIC0.35□□□□□ -2.35
HOXC11O43248 RNU6-647P-201ENST00000364243 107 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 219.9 ms