Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SNORA77B-201ENST00000578179 125 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 AC062037.1-201ENST00000605302 128 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 U6.90-201ENST00000614007 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 U6.70-201ENST00000620287 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNA5SP48-201ENST00000363969 126 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 SNORD41-201ENST00000386967 70 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-972P-201ENST00000391208 107 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 AC103810.8-201ENST00000607347 118 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.99□□□□□ -2.09
USHBP1Q8N6Y0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 SNORD38.1-201ENST00000363863 68 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 Y_RNA.467-201ENST00000384297 102 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 MIR517C-201ENST00000385103 95 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 AC109327.2-201ENST00000448339 378 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 SNORD111.1-201ENST00000516421 86 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-922P-201ENST00000516753 99 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 SNORA31.24-201ENST00000517232 57 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 PRELID3BP2-201ENST00000605362 201 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 MIR8074-201ENST00000615081 81 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 ZNF209P-201ENST00000593450 2304 ntBASIC1.98□□□□□ -2.09
USHBP1Q8N6Y0 Y_RNA.98-201ENST00000363109 102 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-865P-201ENST00000364772 107 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-392P-201ENST00000364926 101 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 MIR676-201ENST00000390702 67 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RNA5SP237-201ENST00000410414 113 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-887P-201ENST00000410660 100 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RPS29P28-201ENST00000446439 141 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RN7SKP12-201ENST00000516275 143 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 RNU7-137P-201ENST00000516788 62 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 AC015688.6-201ENST00000577737 104 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 MIR3192-201ENST00000584920 77 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 GHRLOS.1-201ENST00000610995 70 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 AL157834.3-201ENST00000615543 103 ntBASIC1.97□□□□□ -2.09
USHBP1Q8N6Y0 Y_RNA.17-201ENST00000362433 111 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.118-201ENST00000363300 101 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.247-201ENST00000364500 92 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 RNY1P13-201ENST00000365030 105 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.448-201ENST00000384185 108 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-813P-201ENST00000384691 107 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-1307P-201ENST00000391012 103 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 MIR1304-201ENST00000408243 91 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 AC244023.1-201ENST00000426884 112 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-1006P-201ENST00000516998 103 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 AC242498.1-201ENST00000604134 111 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 MIR376B-201ENST00000614515 100 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 AC105081.1-201ENST00000617727 106 ntBASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.96□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.190-201ENST00000363964 101 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-53P-201ENST00000365367 106 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.355-201ENST00000365462 98 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 MIR34C-201ENST00000384831 77 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-1321P-201ENST00000390905 107 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 HSPE1P24-201ENST00000450782 238 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 AC012493.3-201ENST00000604494 112 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-86P-201ENST00000606534 107 ntBASIC1.95□□□□□ -2.1
USHBP1Q8N6Y0 WWP1P1-201ENST00000466609 2769 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 MIR494-201ENST00000349529 81 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 RNA5SP173-201ENST00000364857 136 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-396P-201ENST00000365369 105 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.508-201ENST00000384502 114 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 MIR1276-201ENST00000408707 83 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 RNA5SP445-201ENST00000515889 115 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 AC141846.1-201ENST00000568348 142 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-90P-201ENST00000606352 106 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 AL096861.1-201ENST00000610899 123 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 IGLL4P-201ENST00000614590 133 ntBASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-1163P-201ENST00000364516 107 ntBASIC1.93□□□□□ -2.1
USHBP1Q8N6Y0 RNA5SP363-201ENST00000365072 115 ntBASIC1.93□□□□□ -2.1
USHBP1Q8N6Y0 RNU7-48P-201ENST00000458875 63 ntBASIC1.93□□□□□ -2.1
USHBP1Q8N6Y0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.93□□□□□ -2.1
USHBP1Q8N6Y0 SNORD58A-201ENST00000383875 65 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 SNORD38.2-201ENST00000384470 69 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 U8.15-201ENST00000390947 134 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 Y_RNA.593-201ENST00000410292 98 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 snoU13.2-201ENST00000459201 104 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 AL133373.1-201ENST00000497098 94 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-947P-201ENST00000516264 106 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 AL662814.1-201ENST00000617364 121 ntBASIC1.92□□□□□ -2.1
USHBP1Q8N6Y0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 RNY1P1-201ENST00000364372 112 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-573P-201ENST00000383938 106 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 SNORD116-22-201ENST00000384430 92 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 RNU6-1152P-201ENST00000384576 107 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 MIR548G-201ENST00000408442 89 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 MIR1302-7-201ENST00000408841 72 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 AC027119.1-201ENST00000440877 241 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 RPL39P39-201ENST00000455840 151 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.91□□□□□ -2.1
USHBP1Q8N6Y0 SNORD116-10-201ENST00000363791 102 ntBASIC1.9□□□□□ -2.11
USHBP1Q8N6Y0 Y_RNA.224-201ENST00000364308 111 ntBASIC1.9□□□□□ -2.11
USHBP1Q8N6Y0 RNU6-949P-201ENST00000384040 107 ntBASIC1.9□□□□□ -2.11
USHBP1Q8N6Y0 Y_RNA.567-201ENST00000384736 106 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 281.7 ms