Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 RNA5SP457-201ENST00000363657 124 ntBASIC1.75□□□□□ -2.13
MRE11P49959 RNA5SP48-201ENST00000363969 126 ntBASIC1.75□□□□□ -2.13
MRE11P49959 RNU6-409P-201ENST00000384114 104 ntBASIC1.75□□□□□ -2.13
MRE11P49959 RNU6-733P-201ENST00000410759 104 ntBASIC1.75□□□□□ -2.13
MRE11P49959 AL353813.1-201ENST00000440700 253 ntBASIC1.75□□□□□ -2.13
MRE11P49959 MIR5582-201ENST00000579697 68 ntBASIC1.75□□□□□ -2.13
MRE11P49959 AL357312.1-201ENST00000603879 298 ntBASIC1.75□□□□□ -2.13
MRE11P49959 AL096861.1-201ENST00000610899 123 ntBASIC1.75□□□□□ -2.13
MRE11P49959 GHRLOS.1-201ENST00000610995 70 ntBASIC1.75□□□□□ -2.13
MRE11P49959 RNU6-1099P-201ENST00000363533 107 ntBASIC1.74□□□□□ -2.13
MRE11P49959 Y_RNA.360-201ENST00000365512 102 ntBASIC1.74□□□□□ -2.13
MRE11P49959 SNORA18-201ENST00000384416 132 ntBASIC1.74□□□□□ -2.13
MRE11P49959 MIR605-201ENST00000385078 83 ntBASIC1.74□□□□□ -2.13
MRE11P49959 MIR548J-201ENST00000408833 112 ntBASIC1.74□□□□□ -2.13
MRE11P49959 SNORA7.5-201ENST00000410672 110 ntBASIC1.74□□□□□ -2.13
MRE11P49959 AC005908.1-201ENST00000468701 347 ntBASIC1.74□□□□□ -2.13
MRE11P49959 RNA5SP436-201ENST00000516020 115 ntBASIC1.74□□□□□ -2.13
MRE11P49959 SNORA40.13-201ENST00000516379 120 ntBASIC1.74□□□□□ -2.13
MRE11P49959 DEFB131E-201ENST00000532329 154 ntBASIC1.74□□□□□ -2.13
MRE11P49959 MIR302D-201ENST00000362275 68 ntBASIC1.73□□□□□ -2.13
MRE11P49959 SNORD33-201ENST00000362761 85 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNY3P2-201ENST00000362918 102 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNU4-36P-201ENST00000364294 144 ntBASIC1.73□□□□□ -2.13
MRE11P49959 SNORD38B-201ENST00000384690 67 ntBASIC1.73□□□□□ -2.13
MRE11P49959 MIR577-201ENST00000385196 96 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNU6-679P-201ENST00000391003 106 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNU1-78P-201ENST00000391248 165 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNY4P30-201ENST00000410216 95 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNU7-35P-201ENST00000517174 62 ntBASIC1.73□□□□□ -2.13
MRE11P49959 MIR4694-201ENST00000578534 80 ntBASIC1.73□□□□□ -2.13
MRE11P49959 FAM71BP1-201ENST00000604431 523 ntBASIC1.73□□□□□ -2.13
MRE11P49959 SNORD38B-202ENST00000625943 69 ntBASIC1.73□□□□□ -2.13
MRE11P49959 RNU6-60P-201ENST00000364792 103 ntBASIC1.72□□□□□ -2.13
MRE11P49959 HSPE1P24-201ENST00000450782 238 ntBASIC1.72□□□□□ -2.13
MRE11P49959 RNU1-98P-201ENST00000458992 160 ntBASIC1.72□□□□□ -2.13
MRE11P49959 RNU6-521P-201ENST00000516663 105 ntBASIC1.72□□□□□ -2.13
MRE11P49959 AL353770.2-201ENST00000620024 78 ntBASIC1.72□□□□□ -2.13
MRE11P49959 MIR8063-201ENST00000621930 81 ntBASIC1.72□□□□□ -2.13
MRE11P49959 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
MRE11P49959 ZNF209P-201ENST00000593450 2304 ntBASIC1.71□□□□□ -2.14
MRE11P49959 RNU6-832P-201ENST00000363319 107 ntBASIC1.71□□□□□ -2.14
MRE11P49959 MIR216A-201ENST00000385063 110 ntBASIC1.71□□□□□ -2.14
MRE11P49959 MIR1304-201ENST00000408243 91 ntBASIC1.71□□□□□ -2.14
MRE11P49959 MIR1302-7-201ENST00000408841 72 ntBASIC1.71□□□□□ -2.14
MRE11P49959 RPS29P23-201ENST00000458635 123 ntBASIC1.71□□□□□ -2.14
MRE11P49959 RNU6-158P-201ENST00000517104 100 ntBASIC1.71□□□□□ -2.14
MRE11P49959 PRELID3BP2-201ENST00000605362 201 ntBASIC1.71□□□□□ -2.14
MRE11P49959 MIR6078-201ENST00000611069 100 ntBASIC1.71□□□□□ -2.14
MRE11P49959 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
MRE11P49959 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
MRE11P49959 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
MRE11P49959 Y_RNA.369-201ENST00000365568 117 ntBASIC1.7□□□□□ -2.14
MRE11P49959 snoU13.25-201ENST00000458945 104 ntBASIC1.7□□□□□ -2.14
MRE11P49959 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.7□□□□□ -2.14
MRE11P49959 Y_RNA.93-201ENST00000363066 109 ntBASIC1.69□□□□□ -2.14
MRE11P49959 SNORA25.3-201ENST00000363205 127 ntBASIC1.69□□□□□ -2.14
MRE11P49959 SNORD1A-201ENST00000364968 72 ntBASIC1.69□□□□□ -2.14
MRE11P49959 SNORD115-35-201ENST00000365122 82 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU6-955P-201ENST00000410497 104 ntBASIC1.69□□□□□ -2.14
MRE11P49959 Y_RNA.601-201ENST00000410500 113 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU6-1086P-201ENST00000410930 100 ntBASIC1.69□□□□□ -2.14
MRE11P49959 AC244023.1-201ENST00000426884 112 ntBASIC1.69□□□□□ -2.14
MRE11P49959 MTATP8P2-201ENST00000435212 202 ntBASIC1.69□□□□□ -2.14
MRE11P49959 SCARNA23-201ENST00000516060 130 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU7-79P-201ENST00000516082 62 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU7-2P-201ENST00000516096 62 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU6-947P-201ENST00000516264 106 ntBASIC1.69□□□□□ -2.14
MRE11P49959 RNU6-1018P-201ENST00000516577 106 ntBASIC1.69□□□□□ -2.14
MRE11P49959 AC006254.2-201ENST00000603259 279 ntBASIC1.69□□□□□ -2.14
MRE11P49959 AC242498.1-201ENST00000604134 111 ntBASIC1.69□□□□□ -2.14
MRE11P49959 MIR4679-1-201ENST00000637619 75 ntBASIC1.69□□□□□ -2.14
MRE11P49959 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
MRE11P49959 Y_RNA.10-201ENST00000362371 110 ntBASIC1.68□□□□□ -2.14
MRE11P49959 RNU6-1313P-201ENST00000362622 102 ntBASIC1.68□□□□□ -2.14
MRE11P49959 RNU6-1201P-201ENST00000384227 107 ntBASIC1.68□□□□□ -2.14
MRE11P49959 MIR206-201ENST00000384872 86 ntBASIC1.68□□□□□ -2.14
MRE11P49959 SNORD67.1-201ENST00000516618 108 ntBASIC1.68□□□□□ -2.14
MRE11P49959 Y_RNA.107-201ENST00000363190 121 ntBASIC1.67□□□□□ -2.14
MRE11P49959 Y_RNA.377-201ENST00000365644 108 ntBASIC1.67□□□□□ -2.14
MRE11P49959 RNU6-1237P-201ENST00000384777 107 ntBASIC1.67□□□□□ -2.14
MRE11P49959 RNU6-1307P-201ENST00000391012 103 ntBASIC1.67□□□□□ -2.14
MRE11P49959 SNORA67.6-201ENST00000391093 99 ntBASIC1.67□□□□□ -2.14
MRE11P49959 AL354695.1-201ENST00000427935 228 ntBASIC1.67□□□□□ -2.14
MRE11P49959 RPL39P39-201ENST00000455840 151 ntBASIC1.67□□□□□ -2.14
MRE11P49959 AC019176.1-201ENST00000518519 225 ntBASIC1.67□□□□□ -2.14
MRE11P49959 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.67□□□□□ -2.14
MRE11P49959 MIR2052-201ENST00000636055 55 ntBASIC1.67□□□□□ -2.14
MRE11P49959 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.67□□□□□ -2.14
MRE11P49959 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.67□□□□□ -2.14
MRE11P49959 RNU6-1131P-201ENST00000364955 107 ntBASIC1.66□□□□□ -2.14
MRE11P49959 MIR488-201ENST00000365739 83 ntBASIC1.66□□□□□ -2.14
MRE11P49959 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.66□□□□□ -2.14
MRE11P49959 AC079140.2-201ENST00000506193 142 ntBASIC1.66□□□□□ -2.14
MRE11P49959 RNU7-137P-201ENST00000516788 62 ntBASIC1.66□□□□□ -2.14
MRE11P49959 AP003716.2-201ENST00000528260 108 ntBASIC1.66□□□□□ -2.14
MRE11P49959 AL512310.12-203ENST00000640543 90 ntBASIC1.66□□□□□ -2.14
MRE11P49959 RNU6-396P-201ENST00000365369 105 ntBASIC1.65□□□□□ -2.15
MRE11P49959 RNA5SP237-201ENST00000410414 113 ntBASIC1.65□□□□□ -2.15
MRE11P49959 snoU13.2-201ENST00000459201 104 ntBASIC1.65□□□□□ -2.15
MRE11P49959 AL133373.1-201ENST00000497098 94 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 297.8 ms