Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNA5SP401-201ENST00000515920 127 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 Y_RNA.698-201ENST00000516798 118 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 AC084781.2-201ENST00000615568 161 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.39□□□□□ -2.79
CUX1P39880 MIR516A2-201ENST00000384888 90 ntBASIC-2.39□□□□□ -2.79
CUX1P39880 MIR516A1-201ENST00000385033 90 ntBASIC-2.39□□□□□ -2.79
CUX1P39880 RNU7-48P-201ENST00000458875 63 ntBASIC-2.39□□□□□ -2.79
CUX1P39880 AC144568.1-201ENST00000520139 137 ntBASIC-2.39□□□□□ -2.79
CUX1P39880 Y_RNA.230-201ENST00000364348 109 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 RNU6-841P-201ENST00000383872 107 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 SNORA40.3-201ENST00000390964 122 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-2.4□□□□□ -2.79
CUX1P39880 RNU6-383P-201ENST00000410864 94 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 MTND3P16-201ENST00000452205 344 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 RNU7-113P-201ENST00000459273 62 ntBASIC-2.4□□□□□ -2.79
CUX1P39880 RNU6-874P-201ENST00000362390 105 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 Y_RNA.54-201ENST00000362766 105 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 RNU6-102P-201ENST00000384485 104 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 RNU6-1158P-201ENST00000391167 107 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 RNU7-70P-201ENST00000516941 66 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 MTATP6P25-201ENST00000574491 261 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-2.41□□□□□ -2.79
CUX1P39880 RNY3P11-201ENST00000364153 102 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 Y_RNA.400-201ENST00000383963 111 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-2.42□□□□□ -2.8
CUX1P39880 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-2.42□□□□□ -2.8
CUX1P39880 AC011476.5-201ENST00000615594 130 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 SNORD19-201ENST00000391191 68 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 SNORD42A-201ENST00000459584 64 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 AC083904.1-201ENST00000487828 231 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 MTCO2P24-201ENST00000515611 426 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-2.42□□□□□ -2.8
CUX1P39880 MIR3123-201ENST00000583417 75 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 AP000240.1-201ENST00000609910 452 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 AC090617.8-201ENST00000623339 167 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 MIR5683-201ENST00000636514 76 ntBASIC-2.42□□□□□ -2.8
CUX1P39880 RNU6-1290P-201ENST00000362957 109 ntBASIC-2.43□□□□□ -2.8
CUX1P39880 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.43□□□□□ -2.8
CUX1P39880 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.43□□□□□ -2.8
CUX1P39880 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-2.43□□□□□ -2.8
CUX1P39880 AC133104.2-201ENST00000615272 193 ntBASIC-2.43□□□□□ -2.8
CUX1P39880 Y_RNA.257-201ENST00000364596 102 ntBASIC-2.44□□□□□ -2.8
CUX1P39880 AC113618.1-201ENST00000416747 285 ntBASIC-2.44□□□□□ -2.8
CUX1P39880 Y_RNA.76-201ENST00000362931 109 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 RNU6-899P-201ENST00000363947 107 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 Y_RNA.304-201ENST00000365011 112 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 RNU4-17P-201ENST00000365598 141 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 SNORA32-201ENST00000384072 121 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 RNU6-261P-201ENST00000459506 102 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 RNU6-1057P-201ENST00000517162 102 ntBASIC-2.45□□□□□ -2.8
CUX1P39880 SNORD37.1-201ENST00000390968 65 ntBASIC-2.46□□□□□ -2.8
CUX1P39880 MTND2P22-201ENST00000444325 1033 ntBASIC-2.46□□□□□ -2.8
CUX1P39880 AC083798.1-201ENST00000472671 131 ntBASIC-2.46□□□□□ -2.8
CUX1P39880 RNU6-636P-201ENST00000384598 107 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 Y_RNA.613-201ENST00000410726 97 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 RPS3AP52-201ENST00000435639 297 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 MRPS36P3-201ENST00000519284 130 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 AP001362.1-201ENST00000625165 124 ntBASIC-2.47□□□□□ -2.8
CUX1P39880 Y_RNA.105-201ENST00000363182 111 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 Y_RNA.127-201ENST00000363386 109 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 Y_RNA.331-201ENST00000365267 102 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 RNU2-55P-201ENST00000411146 174 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 PMCHL1-202ENST00000423102 261 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 SNORA18.6-201ENST00000516792 115 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 RNU6-850P-201ENST00000516934 103 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 MIR3672-201ENST00000584290 82 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 MIR548AB-201ENST00000584917 84 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 AL022161.1-201ENST00000604390 213 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 U6.100-201ENST00000636230 99 ntBASIC-2.47□□□□□ -2.81
CUX1P39880 SNORD81.1-201ENST00000363064 77 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 RNU6-842P-201ENST00000384269 107 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 Y_RNA.481-201ENST00000384373 102 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 RNU6-1248P-201ENST00000391096 64 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 MTND1P2-201ENST00000430604 821 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 RN7SKP295-201ENST00000517264 153 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 MIR466-201ENST00000580653 84 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 TRDV1-202ENST00000621643 102 ntBASIC-2.48□□□□□ -2.81
CUX1P39880 Y_RNA.2-201ENST00000362330 96 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 RNU6-664P-201ENST00000362381 107 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 MIR181A1-201ENST00000385026 110 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 MTND1P34-201ENST00000438556 671 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 SNORD42B-201ENST00000458893 67 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 MIR4748-201ENST00000578076 82 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 MIR5197-201ENST00000583721 112 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 MIR3942-201ENST00000585264 109 ntBASIC-2.49□□□□□ -2.81
CUX1P39880 SNORD36A-201ENST00000362874 73 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 Y_RNA.120-201ENST00000363304 110 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 RNU6-1205P-201ENST00000363625 106 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 SNORD116-11-201ENST00000383882 92 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 RNU6-308P-201ENST00000390957 107 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 RNU6-1254P-201ENST00000391266 104 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 MTND4P28-201ENST00000426217 387 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 ZNF519P2-201ENST00000557032 169 ntBASIC-2.5□□□□□ -2.81
CUX1P39880 FAS-AS1.1-201ENST00000615327 126 ntBASIC-2.5□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 286.2 ms