Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU6-1165P-201ENST00000410119 107 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-447P-201ENST00000410293 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNA5SP95-201ENST00000410319 137 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1118P-201ENST00000410382 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1076P-201ENST00000410397 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-613P-201ENST00000410412 108 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-355P-201ENST00000410427 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-791P-201ENST00000410467 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-705P-201ENST00000410601 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1100P-201ENST00000410691 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-860P-201ENST00000410860 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-1217P-201ENST00000411276 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-785P-201ENST00000411324 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU7-62P-201ENST00000458856 62 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 snoU13.23-201ENST00000458863 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU7-48P-201ENST00000458875 63 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU7-61P-201ENST00000515897 61 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR4303-201ENST00000581299 66 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AL645939.4-201ENST00000604495 135 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 U6.90-201ENST00000614007 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 U6.70-201ENST00000620287 104 ntBASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.73□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR30D-201ENST00000362283 70 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.140-201ENST00000363474 103 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 SNORD38.1-201ENST00000363863 68 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RNU6-60P-201ENST00000364792 103 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 RPS29P28-201ENST00000446439 141 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC108210.2-201ENST00000503681 201 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR4422-201ENST00000581938 83 ntBASIC1.72□□□□□ -2.13
NPHP3-ACAD11A0A0J9YXS1 MIR377-201ENST00000362145 69 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.98-201ENST00000363109 102 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.220-201ENST00000364244 109 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-294P-201ENST00000364999 102 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC245517.4-201ENST00000448601 281 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 SNORA4-201ENST00000584302 138 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 uc_338.6-201ENST00000613544 171 ntBASIC1.71□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU1-42P-201ENST00000364033 160 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-1054P-201ENST00000411293 104 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MRPL35P3-201ENST00000421557 364 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC109327.2-201ENST00000448339 378 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC048334.1-201ENST00000477975 159 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RN7SKP88-201ENST00000516847 250 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC133485.1-201ENST00000567176 124 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 BX248123.2-201ENST00000606318 124 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 7SK.8-201ENST00000612110 250 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 7SK.11-201ENST00000615477 250 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 7SK.13-201ENST00000622040 250 ntBASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.467-201ENST00000384297 102 ntBASIC1.69□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MIR1304-201ENST00000408243 91 ntBASIC1.69□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC104984.5-201ENST00000586878 94 ntBASIC1.69□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AP001362.1-201ENST00000625165 124 ntBASIC1.69□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.168-201ENST00000363740 102 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.290-201ENST00000364879 114 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-580P-201ENST00000365159 107 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 U8.15-201ENST00000390947 134 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MIR934-201ENST00000401241 83 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-902P-201ENST00000517212 91 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MIR4439-201ENST00000583746 80 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 U7.3-201ENST00000616123 62 ntBASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.68□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AL161722.3-201ENST00000605789 2983 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-1163P-201ENST00000364516 107 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MT-TF-201ENST00000387314 71 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-162P-201ENST00000516228 103 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNU6-844P-201ENST00000517175 102 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 SEPT14P17-201ENST00000617978 177 ntBASIC1.67□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 RNY1P2-201ENST00000364820 117 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MIR320A-201ENST00000385302 82 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AL354695.1-201ENST00000427935 228 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 SNORA31.2-201ENST00000516019 134 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.705-201ENST00000516862 110 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AC138749.4-201ENST00000563970 127 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 SNORD53B-201ENST00000577887 78 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 MIR4524B-201ENST00000581569 115 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 AL353997.5-201ENST00000618886 171 ntBASIC1.66□□□□□ -2.14
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.96-201ENST00000363092 109 ntBASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.363-201ENST00000365529 113 ntBASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 MIR548G-201ENST00000408442 89 ntBASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 BTF3P4-201ENST00000418852 495 ntBASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-90P-201ENST00000606352 106 ntBASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.65□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.330-201ENST00000365230 109 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORD38.2-201ENST00000384470 69 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA2B-201ENST00000384583 137 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-813P-201ENST00000384691 107 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA67.6-201ENST00000391093 99 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA75.2-201ENST00000391138 150 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SNORA75.3-201ENST00000391231 150 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 SPINT5P-201ENST00000448174 155 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 AC023790.1-201ENST00000482174 347 ntBASIC1.64□□□□□ -2.15
NPHP3-ACAD11A0A0J9YXS1 RNU6-86P-201ENST00000606534 107 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms