Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR3973-201ENST00000579824 107 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.78□□□□□ -2.28
PDLIM3Q53GG5 SNORA22.1-201ENST00000362701 134 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 RNU4-11P-201ENST00000365287 132 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 MIR520F-201ENST00000384824 87 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 SNORD99-201ENST00000408612 74 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.77□□□□□ -2.29
PDLIM3Q53GG5 MIR377-201ENST00000362145 69 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-508P-201ENST00000363231 103 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-151P-201ENST00000364158 107 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.270-201ENST00000364693 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.272-201ENST00000364696 102 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.497-201ENST00000384447 98 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-1319P-201ENST00000390855 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-747P-201ENST00000390928 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-241P-201ENST00000391148 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-177P-201ENST00000411257 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RPS26P5-201ENST00000418544 335 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 snoU13.2-201ENST00000459201 104 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 U7.7-201ENST00000459276 60 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 DNAJC19P2-201ENST00000593340 302 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 AC020891.4-201ENST00000605745 93 ntBASIC0.76□□□□□ -2.29
PDLIM3Q53GG5 RNU6-580P-201ENST00000365159 107 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 RNU6-690P-201ENST00000365242 106 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 RNU6-1130P-201ENST00000365434 107 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 SNORD116-18-201ENST00000383961 92 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 RNY1P6-201ENST00000384193 109 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 RNU6-804P-201ENST00000384286 107 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.785-201ENST00000384290 109 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 RNU6-1135P-201ENST00000411083 103 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.700-201ENST00000516806 100 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 MIR4698-201ENST00000577795 80 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 AL136317.1-201ENST00000612653 226 ntBASIC0.75□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.171-201ENST00000363760 102 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 SNORD18B-201ENST00000365659 72 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 MIR1265-201ENST00000408444 86 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 MIR1827-201ENST00000408549 66 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 RNU6-240P-201ENST00000516098 97 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 RNA5SP285-201ENST00000516619 119 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 AC011195.1-201ENST00000578177 177 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 MIR4676-201ENST00000583078 72 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 AC013244.2-201ENST00000603396 103 ntBASIC0.74□□□□□ -2.29
PDLIM3Q53GG5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 MIR520H-201ENST00000385126 88 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 SNORD105-201ENST00000386910 85 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.584-201ENST00000391090 114 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 RNU6-1110P-201ENST00000516462 101 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 Y_RNA.686-201ENST00000516548 134 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 AC112693.2-201ENST00000556538 232 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 AC133485.1-201ENST00000567176 124 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 AC138907.6-201ENST00000568401 126 ntBASIC0.73□□□□□ -2.29
PDLIM3Q53GG5 RNU6-449P-201ENST00000383914 107 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 SNORA18-201ENST00000384416 132 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 MIR1257-201ENST00000408490 117 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 SNORD93-201ENST00000408813 74 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 RNU7-121P-201ENST00000516604 62 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 RNU6-1258P-201ENST00000516911 111 ntBASIC0.72□□□□□ -2.29
PDLIM3Q53GG5 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU6-369P-201ENST00000362515 102 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 SNORD114-2-201ENST00000363953 78 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 SNORA32-201ENST00000384072 121 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.441-201ENST00000384123 112 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU6-364P-201ENST00000384387 107 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP222-201ENST00000411039 105 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 AC004941.2-201ENST00000427009 228 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 MTATP6P21-201ENST00000440681 189 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU7-185P-201ENST00000459215 60 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU6-351P-201ENST00000516097 100 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP236-201ENST00000516169 116 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 SNORA25.12-201ENST00000516202 82 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.690-201ENST00000516603 95 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU2-60P-201ENST00000517290 128 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 MIR3646-201ENST00000578301 84 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 MIR3671-201ENST00000580455 88 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 AC025627.3-201ENST00000582078 182 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 AL353765.1-201ENST00000605514 183 ntBASIC0.71□□□□□ -2.3
PDLIM3Q53GG5 RNU6-349P-201ENST00000362402 107 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 RNU6-309P-201ENST00000364573 106 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 MIR146A-201ENST00000385201 99 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 RNU6-460P-201ENST00000391158 108 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 MIR18B-201ENST00000454574 71 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 RNU7-113P-201ENST00000459273 62 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 RNA5SP33-201ENST00000516687 98 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 MIR4711-201ENST00000578274 70 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.757-201ENST00000578934 114 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 AL662814.1-201ENST00000617364 121 ntBASIC0.7□□□□□ -2.3
PDLIM3Q53GG5 MIR30D-201ENST00000362283 70 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 RNU6-403P-201ENST00000363163 104 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.398-201ENST00000383952 99 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 SNORA36.2-201ENST00000384004 127 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 Y_RNA.430-201ENST00000384081 110 ntBASIC0.69□□□□□ -2.3
PDLIM3Q53GG5 MIR938-201ENST00000401216 83 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms