Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC024614.2-201ENST00000577584 372 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AC062037.1-201ENST00000605302 128 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AL353997.5-201ENST00000618886 171 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AL512310.12-203ENST00000640543 90 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AP000648.3-201ENST00000623539 4507 ntBASIC1.74□□□□□ -2.13
MSX2P35548 Y_RNA.95-201ENST00000363079 95 ntBASIC1.73□□□□□ -2.13
MSX2P35548 Y_RNA.247-201ENST00000364500 92 ntBASIC1.73□□□□□ -2.13
MSX2P35548 SNORD67.1-201ENST00000516618 108 ntBASIC1.73□□□□□ -2.13
MSX2P35548 RNU6-922P-201ENST00000516753 99 ntBASIC1.73□□□□□ -2.13
MSX2P35548 RNU6-250P-201ENST00000516958 103 ntBASIC1.73□□□□□ -2.13
MSX2P35548 RNU6-548P-201ENST00000517083 115 ntBASIC1.73□□□□□ -2.13
MSX2P35548 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.73□□□□□ -2.13
MSX2P35548 MIR3192-201ENST00000584920 77 ntBASIC1.73□□□□□ -2.13
MSX2P35548 U7.3-201ENST00000616123 62 ntBASIC1.73□□□□□ -2.13
MSX2P35548 RNU6-1086P-201ENST00000410930 100 ntBASIC1.72□□□□□ -2.13
MSX2P35548 AC005908.1-201ENST00000468701 347 ntBASIC1.72□□□□□ -2.13
MSX2P35548 RNA5SP445-201ENST00000515889 115 ntBASIC1.72□□□□□ -2.13
MSX2P35548 Y_RNA.659-201ENST00000515994 113 ntBASIC1.72□□□□□ -2.13
MSX2P35548 RNU7-79P-201ENST00000516082 62 ntBASIC1.72□□□□□ -2.13
MSX2P35548 MIR3122-201ENST00000577243 73 ntBASIC1.72□□□□□ -2.13
MSX2P35548 AL096861.1-201ENST00000610899 123 ntBASIC1.72□□□□□ -2.13
MSX2P35548 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
MSX2P35548 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
MSX2P35548 RNA5SP48-201ENST00000363969 126 ntBASIC1.71□□□□□ -2.14
MSX2P35548 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.71□□□□□ -2.14
MSX2P35548 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
MSX2P35548 MIR1302-7-201ENST00000408841 72 ntBASIC1.71□□□□□ -2.14
MSX2P35548 AC003989.2-201ENST00000440224 169 ntBASIC1.71□□□□□ -2.14
MSX2P35548 snoU13.9-201ENST00000458927 103 ntBASIC1.71□□□□□ -2.14
MSX2P35548 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.71□□□□□ -2.14
MSX2P35548 RNU6-162P-201ENST00000516228 103 ntBASIC1.71□□□□□ -2.14
MSX2P35548 RNU7-137P-201ENST00000516788 62 ntBASIC1.71□□□□□ -2.14
MSX2P35548 AP000942.3-201ENST00000603702 160 ntBASIC1.71□□□□□ -2.14
MSX2P35548 MIR376B-201ENST00000614515 100 ntBASIC1.71□□□□□ -2.14
MSX2P35548 MIR219B-201ENST00000637023 88 ntBASIC1.71□□□□□ -2.14
MSX2P35548 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
MSX2P35548 Y_RNA.140-201ENST00000363474 103 ntBASIC1.7□□□□□ -2.14
MSX2P35548 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
MSX2P35548 Y_RNA.467-201ENST00000384297 102 ntBASIC1.7□□□□□ -2.14
MSX2P35548 SNORD38B-201ENST00000384690 67 ntBASIC1.7□□□□□ -2.14
MSX2P35548 MIR34C-201ENST00000384831 77 ntBASIC1.7□□□□□ -2.14
MSX2P35548 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.7□□□□□ -2.14
MSX2P35548 BTF3P4-201ENST00000418852 495 ntBASIC1.7□□□□□ -2.14
MSX2P35548 MRPL35P3-201ENST00000421557 364 ntBASIC1.7□□□□□ -2.14
MSX2P35548 AC244023.1-201ENST00000426884 112 ntBASIC1.7□□□□□ -2.14
MSX2P35548 snoU13.25-201ENST00000458945 104 ntBASIC1.7□□□□□ -2.14
MSX2P35548 RPS29P11-201ENST00000496507 171 ntBASIC1.7□□□□□ -2.14
MSX2P35548 AC242498.1-201ENST00000604134 111 ntBASIC1.7□□□□□ -2.14
MSX2P35548 PRELID3BP2-201ENST00000605362 201 ntBASIC1.7□□□□□ -2.14
MSX2P35548 SNORD38B-202ENST00000625943 69 ntBASIC1.7□□□□□ -2.14
MSX2P35548 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.7□□□□□ -2.14
MSX2P35548 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
MSX2P35548 SNORD114-10-201ENST00000363409 72 ntBASIC1.69□□□□□ -2.14
MSX2P35548 RNY1P13-201ENST00000365030 105 ntBASIC1.69□□□□□ -2.14
MSX2P35548 Y_RNA.448-201ENST00000384185 108 ntBASIC1.69□□□□□ -2.14
MSX2P35548 RNU6-1321P-201ENST00000390905 107 ntBASIC1.69□□□□□ -2.14
MSX2P35548 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.69□□□□□ -2.14
MSX2P35548 Y_RNA.593-201ENST00000410292 98 ntBASIC1.69□□□□□ -2.14
MSX2P35548 RN7SKP12-201ENST00000516275 143 ntBASIC1.69□□□□□ -2.14
MSX2P35548 MIR4439-201ENST00000583746 80 ntBASIC1.69□□□□□ -2.14
MSX2P35548 AC096720.1-201ENST00000604441 183 ntBASIC1.69□□□□□ -2.14
MSX2P35548 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.68□□□□□ -2.14
MSX2P35548 RNU6-1134P-201ENST00000365156 101 ntBASIC1.68□□□□□ -2.14
MSX2P35548 MIR450A2-201ENST00000385022 100 ntBASIC1.68□□□□□ -2.14
MSX2P35548 AC109327.2-201ENST00000448339 378 ntBASIC1.68□□□□□ -2.14
MSX2P35548 Y_RNA.705-201ENST00000516862 110 ntBASIC1.68□□□□□ -2.14
MSX2P35548 AC141846.1-201ENST00000568348 142 ntBASIC1.68□□□□□ -2.14
MSX2P35548 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.68□□□□□ -2.14
MSX2P35548 AC105081.1-201ENST00000617727 106 ntBASIC1.68□□□□□ -2.14
MSX2P35548 Y_RNA.96-201ENST00000363092 109 ntBASIC1.67□□□□□ -2.14
MSX2P35548 SNORD38.1-201ENST00000363863 68 ntBASIC1.67□□□□□ -2.14
MSX2P35548 RNU6-1237P-201ENST00000384777 107 ntBASIC1.67□□□□□ -2.14
MSX2P35548 RNU6-887P-201ENST00000410660 100 ntBASIC1.67□□□□□ -2.14
MSX2P35548 AL445685.2-201ENST00000422551 342 ntBASIC1.67□□□□□ -2.14
MSX2P35548 AL603825.1-201ENST00000438481 80 ntBASIC1.67□□□□□ -2.14
MSX2P35548 HSPE1P24-201ENST00000450782 238 ntBASIC1.67□□□□□ -2.14
MSX2P35548 RNA5SP458-201ENST00000516188 119 ntBASIC1.67□□□□□ -2.14
MSX2P35548 AL357312.1-201ENST00000603879 298 ntBASIC1.67□□□□□ -2.14
MSX2P35548 GHRLOS.1-201ENST00000610995 70 ntBASIC1.67□□□□□ -2.14
MSX2P35548 AL662814.1-201ENST00000617364 121 ntBASIC1.67□□□□□ -2.14
MSX2P35548 SEPT14P17-201ENST00000617978 177 ntBASIC1.67□□□□□ -2.14
MSX2P35548 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.67□□□□□ -2.14
MSX2P35548 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
MSX2P35548 MIR302D-201ENST00000362275 68 ntBASIC1.66□□□□□ -2.14
MSX2P35548 Y_RNA.17-201ENST00000362433 111 ntBASIC1.66□□□□□ -2.14
MSX2P35548 RNY1P10-201ENST00000363268 113 ntBASIC1.66□□□□□ -2.14
MSX2P35548 RNU6-1163P-201ENST00000364516 107 ntBASIC1.66□□□□□ -2.14
MSX2P35548 RNU1-78P-201ENST00000391248 165 ntBASIC1.66□□□□□ -2.14
MSX2P35548 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
MSX2P35548 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.66□□□□□ -2.14
MSX2P35548 Y_RNA.190-201ENST00000363964 101 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-865P-201ENST00000364772 107 ntBASIC1.65□□□□□ -2.15
MSX2P35548 SNORD1A-201ENST00000364968 72 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-820P-201ENST00000384273 107 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-1152P-201ENST00000384576 107 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-813P-201ENST00000384691 107 ntBASIC1.65□□□□□ -2.15
MSX2P35548 MIR563-201ENST00000385080 79 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-972P-201ENST00000391208 107 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-447P-201ENST00000410293 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-1118P-201ENST00000410382 104 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms