Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL445193.1-201ENST00000441183 141 ntBASIC-1.55□□□□□ -2.66
TPM1P09493 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.55□□□□□ -2.66
TPM1P09493 YWHAEP2-201ENST00000580066 112 ntBASIC-1.55□□□□□ -2.66
TPM1P09493 AL365205.2-201ENST00000594586 68 ntBASIC-1.55□□□□□ -2.66
TPM1P09493 PART1_1.1-201ENST00000611761 217 ntBASIC-1.55□□□□□ -2.66
TPM1P09493 Y_RNA.105-201ENST00000363182 111 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 RNU7-113P-201ENST00000459273 62 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 RNU6-358P-201ENST00000516564 75 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 SNORA20.3-201ENST00000516880 132 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 AL359881.1-201ENST00000602916 267 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 AL008718.3-201ENST00000610217 321 ntBASIC-1.56□□□□□ -2.66
TPM1P09493 SNORA32-201ENST00000384072 121 ntBASIC-1.57□□□□□ -2.66
TPM1P09493 MIR519A1-201ENST00000385257 85 ntBASIC-1.57□□□□□ -2.66
TPM1P09493 MT-TQ-201ENST00000387372 72 ntBASIC-1.57□□□□□ -2.66
TPM1P09493 MTND4LP30-201ENST00000454092 297 ntBASIC-1.57□□□□□ -2.66
TPM1P09493 RNA5SP33-201ENST00000516687 98 ntBASIC-1.57□□□□□ -2.66
TPM1P09493 SNORD115-2-201ENST00000362842 82 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 RNU4-73P-201ENST00000363164 141 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 SNORD115-20-201ENST00000365099 82 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 Y_RNA.552-201ENST00000384665 112 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 MIR224-201ENST00000384889 81 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 RNA5SP144-201ENST00000410846 116 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 RNU6-559P-201ENST00000516151 98 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 MIR7111-201ENST00000619751 72 ntBASIC-1.58□□□□□ -2.66
TPM1P09493 RNU6-845P-201ENST00000362578 103 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 RNU6-1201P-201ENST00000384227 107 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 AC093423.1-201ENST00000440817 142 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 RNU6-881P-201ENST00000516813 102 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 RNU6-570P-201ENST00000517051 105 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 MIR4636-201ENST00000582271 80 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 AL606534.2-204ENST00000635008 178 ntBASIC-1.59□□□□□ -2.66
TPM1P09493 Y_RNA.303-201ENST00000364998 94 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 RNU6-662P-201ENST00000384253 104 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 MIR3681-201ENST00000580089 72 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 MIR376A1-201ENST00000616574 68 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 snoU18.1-201ENST00000629629 71 ntBASIC-1.6□□□□□ -2.67
TPM1P09493 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 RNU6-154P-201ENST00000384306 106 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 Y_RNA.496-201ENST00000384444 101 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 RNU6-900P-201ENST00000384498 102 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 RNU6-901P-201ENST00000384593 106 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 SNORD56B-201ENST00000384713 71 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 MT-TT-201ENST00000387460 66 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 MIR196A1-201ENST00000388006 70 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 MIR548I2-201ENST00000408348 149 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 SCARNA15-202ENST00000516881 127 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 MIR4500-201ENST00000579472 76 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 MIR548AE1-201ENST00000583292 70 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 AC022079.1-201ENST00000621546 602 ntBASIC-1.61□□□□□ -2.67
TPM1P09493 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 RNY1P7-201ENST00000384743 110 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 MIR519E-201ENST00000385075 84 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1.62□□□□□ -2.67
TPM1P09493 AC006504.6-201ENST00000590142 199 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 AC113139.1-201ENST00000605049 239 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 SNORD58B-201ENST00000607313 66 ntBASIC-1.62□□□□□ -2.67
TPM1P09493 RNU1-115P-201ENST00000365329 160 ntBASIC-1.63□□□□□ -2.67
TPM1P09493 RNU7-195P-201ENST00000458793 62 ntBASIC-1.63□□□□□ -2.67
TPM1P09493 AC069439.1-201ENST00000494739 167 ntBASIC-1.63□□□□□ -2.67
TPM1P09493 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-1.63□□□□□ -2.67
TPM1P09493 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-1.63□□□□□ -2.67
TPM1P09493 RNU4-36P-201ENST00000364294 144 ntBASIC-1.64□□□□□ -2.67
TPM1P09493 MIR617-201ENST00000385030 97 ntBASIC-1.64□□□□□ -2.67
TPM1P09493 AL606845.1-201ENST00000404881 255 ntBASIC-1.64□□□□□ -2.67
TPM1P09493 SNORA13-201ENST00000458790 133 ntBASIC-1.64□□□□□ -2.67
TPM1P09493 MIR4280-201ENST00000582178 76 ntBASIC-1.64□□□□□ -2.67
TPM1P09493 SNORA25.1-201ENST00000362326 128 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 RNU6-1260P-201ENST00000362944 107 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 Y_RNA.251-201ENST00000364551 99 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 RNY1P6-201ENST00000384193 109 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 RNU6-524P-201ENST00000384270 107 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 RNU4-63P-201ENST00000411313 118 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 RNU6-718P-201ENST00000516166 105 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 MIR4460-201ENST00000577862 86 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 MIR548AG2-201ENST00000581228 64 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1.65□□□□□ -2.67
TPM1P09493 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 SNORD63B-201ENST00000411005 70 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 AC074198.2-201ENST00000508153 258 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 RNU6-720P-201ENST00000516363 108 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 MIR548AE2-201ENST00000583456 67 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 RNU6-86P-201ENST00000606534 107 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 MIR6851-201ENST00000617060 67 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 AC104985.2-201ENST00000620598 500 ntBASIC-1.66□□□□□ -2.68
TPM1P09493 RNU4-24P-201ENST00000364565 139 ntBASIC-1.67□□□□□ -2.68
TPM1P09493 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.67□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 225.7 ms