Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNU7-79P-201ENST00000516082 62 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORA25.13-201ENST00000516395 103 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-56P-201ENST00000516986 93 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR5007-201ENST00000583098 95 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 Y_RNA.783-201ENST00000613546 102 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AP000648.3-201ENST00000623539 4507 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC016717.2-201ENST00000609089 5141 ntBASIC2.89□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU7-137P-201ENST00000516788 62 ntBASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR5002-201ENST00000584713 97 ntBASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR8055-201ENST00000610739 97 ntBASIC2.88□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-1031P-201ENST00000384773 107 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR29C-201ENST00000385231 88 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU4-62P-201ENST00000410125 130 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC093850.1-201ENST00000454121 251 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC004223.1-201ENST00000479840 271 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC104435.1-201ENST00000483483 166 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR4285-201ENST00000581001 85 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR8065-201ENST00000620577 100 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AP001362.1-201ENST00000625165 124 ntBASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU1-58P-201ENST00000362413 163 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORA2B-201ENST00000384583 137 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNA5SP338-201ENST00000410495 85 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNA5SP492-201ENST00000411330 114 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 Z96811.1-201ENST00000445880 108 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU7-153P-201ENST00000516455 62 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-539P-201ENST00000516665 103 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC105081.1-201ENST00000617727 106 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AL449363.1-201ENST00000617815 186 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR219B-201ENST00000637023 88 ntBASIC2.86□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 Y_RNA.57-201ENST00000362806 113 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-624P-201ENST00000363411 107 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-478P-201ENST00000363904 110 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU1-109P-201ENST00000383960 147 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORA40.18-201ENST00000391200 128 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC020891.4-201ENST00000605745 93 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC022709.1-201ENST00000615967 87 ntBASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 SNORD115-3-201ENST00000363100 82 ntBASIC2.84□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 AC087499.7-201ENST00000441958 109 ntBASIC2.84□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNU6-557P-201ENST00000516842 110 ntBASIC2.84□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 MIR5094-201ENST00000578766 85 ntBASIC2.84□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 Z97988.1-201ENST00000637697 135 ntBASIC2.84□□□□□ -1.95
SENP3-EIF4A1A0A087X0R7 RNA5SP133-201ENST00000363368 119 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU6-461P-201ENST00000364195 107 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RPL23AP6-201ENST00000446637 472 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 snoU13.11-201ENST00000459219 104 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU6-523P-201ENST00000516304 54 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNA5SP476-201ENST00000516613 103 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORD14A-201ENST00000606526 91 ntBASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU4-32P-201ENST00000363404 141 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 Y_RNA.433-201ENST00000384089 102 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AL450471.1-201ENST00000447509 127 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 HAR1A.1-201ENST00000459583 118 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU6-871P-201ENST00000516122 100 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AL513423.1-201ENST00000621695 132 ntBASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 HSBP1P2-201ENST00000299671 229 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORD56.5-201ENST00000364281 72 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORD4B-201ENST00000459083 72 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AC125388.1-201ENST00000459631 156 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIR8066-201ENST00000617280 78 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.81□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU6-411P-201ENST00000384451 107 ntBASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIR526A1-201ENST00000384897 85 ntBASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORD13-201ENST00000459299 104 ntBASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 CYP3A52P-201ENST00000563326 91 ntBASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AL512598.1-201ENST00000610158 273 ntBASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RNU6-686P-201ENST00000364839 107 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIR598-201ENST00000384868 97 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIR660-201ENST00000385235 97 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 RPS29P11-201ENST00000496507 171 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORA31.11-201ENST00000516528 139 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AC133485.1-201ENST00000567176 124 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AP000753.3-201ENST00000604083 169 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 Y_RNA.788-201ENST00000622394 112 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 AP000553.5-201ENST00000641933 54 ntBASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIRLET7A1-201ENST00000362295 80 ntBASIC2.78□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 Y_RNA.327-201ENST00000365201 102 ntBASIC2.78□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 UBBP3-201ENST00000445497 241 ntBASIC2.78□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 Y_RNA.660-201ENST00000516002 120 ntBASIC2.78□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 SNORA31.15-201ENST00000516771 132 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 241 ms