Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 RNA5SP247-201ENST00000411181 105 ntBASIC2.58□□□□□ -2
ATG3Q9NT62 AC108667.1-201ENST00000428618 249 ntBASIC2.58□□□□□ -2
ATG3Q9NT62 RNA5SP168-201ENST00000516642 112 ntBASIC2.58□□□□□ -2
ATG3Q9NT62 MIR5089-201ENST00000580047 84 ntBASIC2.58□□□□□ -2
ATG3Q9NT62 MIR6717-201ENST00000622747 73 ntBASIC2.58□□□□□ -2
ATG3Q9NT62 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.58□□□□□ -2
ATG3Q9NT62 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.57□□□□□ -2
ATG3Q9NT62 RNU1-58P-201ENST00000362413 163 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 RNU6-509P-201ENST00000363519 107 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 Y_RNA.430-201ENST00000384081 110 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 SNORD28B-201ENST00000390993 75 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 MIR3152-201ENST00000579801 74 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.57□□□□□ -2
ATG3Q9NT62 MIR6840-201ENST00000611937 71 ntBASIC2.57□□□□□ -2
ATG3Q9NT62 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.57□□□□□ -2
ATG3Q9NT62 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
ATG3Q9NT62 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
ATG3Q9NT62 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.57□□□□□ -2
ATG3Q9NT62 MIRLET7G-201ENST00000362280 84 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 RNU6-776P-201ENST00000364403 104 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 RNU6-1022P-201ENST00000365049 104 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 Y_RNA.370-201ENST00000365589 108 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 RNA5SP450-201ENST00000411206 102 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 AC139453.2-201ENST00000487255 133 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 AC090255.1-201ENST00000495779 349 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 AC019288.1-201ENST00000557918 224 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 MIR4498-201ENST00000577599 66 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 MIR4439-201ENST00000583746 80 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 AC096720.1-201ENST00000604441 183 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 SNORA28-201ENST00000606769 126 ntBASIC2.56□□□□□ -2
ATG3Q9NT62 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
ATG3Q9NT62 Y_RNA.94-201ENST00000363068 106 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 SNORA24-201ENST00000384096 131 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 RNA5SP465-201ENST00000391195 109 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 AC003989.2-201ENST00000440224 169 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 AC093850.1-201ENST00000454121 251 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 RNU7-67P-201ENST00000459003 62 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 MIR548AR-201ENST00000582191 57 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.55□□□□□ -2
ATG3Q9NT62 AL020996.3-201ENST00000606617 222 ntBASIC2.55□□□□□ -2
ATG3Q9NT62 SNORD115-27-201ENST00000364430 82 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 RNU6-342P-201ENST00000384521 104 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 RNU11-3P-201ENST00000391111 133 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 MIR889-201ENST00000401280 79 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 HMGN1P33-201ENST00000432945 451 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 RPS29P29-201ENST00000456396 171 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 RNU7-12P-201ENST00000516030 62 ntBASIC2.54□□□□□ -2
ATG3Q9NT62 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.53□□□□□ -2
ATG3Q9NT62 RNU6-633P-201ENST00000362612 103 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 RNU6-1019P-201ENST00000364424 107 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 Y_RNA.316-201ENST00000365118 111 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 SNORA6-201ENST00000384033 151 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 MIR34C-201ENST00000384831 77 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 MIR597-201ENST00000384968 97 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 RNA5SP338-201ENST00000410495 85 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 Y_RNA.609-201ENST00000410669 89 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 RNU7-2P-201ENST00000516096 62 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 MIR5094-201ENST00000578766 85 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 MIR4448-201ENST00000584360 86 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 MIR4662A-201ENST00000637499 67 ntBASIC2.53□□□□□ -2
ATG3Q9NT62 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.53□□□□□ -2
ATG3Q9NT62 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
ATG3Q9NT62 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
ATG3Q9NT62 MIR206-201ENST00000384872 86 ntBASIC2.52□□□□□ -2.01
ATG3Q9NT62 RNU7-53P-201ENST00000516705 60 ntBASIC2.52□□□□□ -2.01
ATG3Q9NT62 AC020891.4-201ENST00000605745 93 ntBASIC2.52□□□□□ -2.01
ATG3Q9NT62 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ATG3Q9NT62 SNORA1.2-201ENST00000365189 134 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AL034345.1-201ENST00000407768 123 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 Y_RNA.607-201ENST00000410597 98 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AL445685.2-201ENST00000422551 342 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.51□□□□□ -2.01
ATG3Q9NT62 RNU7-73P-201ENST00000458743 63 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 DNAJC19P9-201ENST00000555084 351 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AC005786.1-201ENST00000588553 154 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AC243994.1-201ENST00000618627 109 ntBASIC2.51□□□□□ -2.01
ATG3Q9NT62 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.5□□□□□ -2.01
ATG3Q9NT62 MIR526A1-201ENST00000384897 85 ntBASIC2.5□□□□□ -2.01
ATG3Q9NT62 RNU6-613P-201ENST00000410412 108 ntBASIC2.5□□□□□ -2.01
ATG3Q9NT62 AC069114.2-201ENST00000604699 304 ntBASIC2.5□□□□□ -2.01
ATG3Q9NT62 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ATG3Q9NT62 RNU6-1244P-201ENST00000363614 108 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 RNU6-457P-201ENST00000363999 107 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 SNORA70.7-201ENST00000384159 133 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 RNU6-524P-201ENST00000384270 107 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 RNU6-1031P-201ENST00000384773 107 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 MIR136-201ENST00000385207 82 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 SNORD123-201ENST00000459473 70 ntBASIC2.49□□□□□ -2.01
ATG3Q9NT62 SNORD38.1-201ENST00000363863 68 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 MIR9-3-201ENST00000385084 90 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
ATG3Q9NT62 RNA5SP261-201ENST00000410536 106 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 RNU6-1053P-201ENST00000515930 101 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 RNU7-35P-201ENST00000517174 62 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 MIR8055-201ENST00000610739 97 ntBASIC2.48□□□□□ -2.01
ATG3Q9NT62 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
ATG3Q9NT62 AL596028.1-201ENST00000326971 197 ntBASIC2.47□□□□□ -2.01
ATG3Q9NT62 RNA5SP276-201ENST00000362580 94 ntBASIC2.47□□□□□ -2.01
ATG3Q9NT62 MIR452-201ENST00000385020 85 ntBASIC2.47□□□□□ -2.01
ATG3Q9NT62 AC073261.1-201ENST00000429409 121 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 293.6 ms