Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC067940.1-201ENST00000458411 300 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 COX6CP6-201ENST00000490840 228 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 AC023827.1-201ENST00000569247 97 ntBASIC1.92□□□□□ -2.1
TRAIPQ9BWF2 SNORD115-2-201ENST00000362842 82 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.127-201ENST00000363386 109 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 Y_RNA.218-201ENST00000364218 104 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 SNORD115-20-201ENST00000365099 82 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 SNORD77B-201ENST00000391112 67 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 AL606753.1-201ENST00000427435 87 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 RNU6-1333P-201ENST00000516162 93 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 RNU6-406P-201ENST00000516470 107 ntBASIC1.91□□□□□ -2.1
TRAIPQ9BWF2 RNU7-107P-201ENST00000459121 61 ntBASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 RNU6-781P-201ENST00000516377 101 ntBASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 IGKV1-22-201ENST00000524313 326 ntBASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 AC012676.2-201ENST00000619258 186 ntBASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
TRAIPQ9BWF2 RNU4-69P-201ENST00000410677 143 ntBASIC1.89□□□□□ -2.11
TRAIPQ9BWF2 AC108667.1-201ENST00000428618 249 ntBASIC1.89□□□□□ -2.11
TRAIPQ9BWF2 SNORD13-201ENST00000459299 104 ntBASIC1.89□□□□□ -2.11
TRAIPQ9BWF2 AC106800.4-201ENST00000614905 153 ntBASIC1.89□□□□□ -2.11
TRAIPQ9BWF2 U2.22-201ENST00000636441 106 ntBASIC1.89□□□□□ -2.11
TRAIPQ9BWF2 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 Y_RNA.198-201ENST00000364013 98 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 RNU6-1165P-201ENST00000410119 107 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 AC002429.1-201ENST00000437672 148 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 RNU6-1258P-201ENST00000516911 111 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 AC036111.3-201ENST00000526389 112 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 MIR4419B-201ENST00000577260 68 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 MIR3163-201ENST00000581592 73 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 MIR502-201ENST00000606349 86 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 U6.95-201ENST00000636931 70 ntBASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
TRAIPQ9BWF2 Y_RNA.470-201ENST00000384307 117 ntBASIC1.87□□□□□ -2.11
TRAIPQ9BWF2 RNU6-997P-201ENST00000384725 107 ntBASIC1.87□□□□□ -2.11
TRAIPQ9BWF2 RNU6-580P-201ENST00000365159 107 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 SNORA32-201ENST00000384072 121 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 SNORA19-201ENST00000384737 128 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 RPS23P4-201ENST00000487908 423 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 RNU6-313P-201ENST00000516317 112 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 RNU6-659P-201ENST00000516454 104 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 Y_RNA.712-201ENST00000517011 92 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 MIR4498-201ENST00000577599 66 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 MIR3618-201ENST00000580330 88 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 MIR8081-201ENST00000611533 95 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 AC027335.2-201ENST00000624030 375 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 MTND5P18-201ENST00000445624 1801 ntBASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
TRAIPQ9BWF2 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 Y_RNA.140-201ENST00000363474 103 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 SNORD48-201ENST00000364953 64 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 RNU6-22P-201ENST00000384355 107 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 RNU6-1086P-201ENST00000410930 100 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 MIR18B-201ENST00000454574 71 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 MIR548AE2-201ENST00000583456 67 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 AL359881.1-201ENST00000602916 267 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 AL662814.1-201ENST00000617364 121 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 MIR6740-201ENST00000618268 113 ntBASIC1.85□□□□□ -2.11
TRAIPQ9BWF2 MT-TF-201ENST00000387314 71 ntBASIC1.84□□□□□ -2.11
TRAIPQ9BWF2 RNU6-1154P-201ENST00000391001 104 ntBASIC1.84□□□□□ -2.11
TRAIPQ9BWF2 RNU6-934P-201ENST00000365154 107 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 RNU6-342P-201ENST00000384521 104 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 RNU6-1081P-201ENST00000384537 107 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 RNU7-6P-201ENST00000516845 62 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 AC022523.2-201ENST00000561045 150 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 SNORA4-201ENST00000584302 138 ntBASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
TRAIPQ9BWF2 RNY4P6-201ENST00000363667 96 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 RNU7-79P-201ENST00000516082 62 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 RNU6-479P-201ENST00000516348 105 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 AC141846.1-201ENST00000568348 142 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 MIR4781-201ENST00000585250 76 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 AL365222.1-201ENST00000614661 98 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 MIR3914-2-201ENST00000637339 95 ntBASIC1.82□□□□□ -2.12
TRAIPQ9BWF2 FABP5P4-201ENST00000437203 171 ntBASIC1.81□□□□□ -2.12
TRAIPQ9BWF2 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.81□□□□□ -2.12
TRAIPQ9BWF2 snoU13.31-201ENST00000607291 104 ntBASIC1.81□□□□□ -2.12
TRAIPQ9BWF2 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 MIR200A-201ENST00000384875 90 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 MIRLET7F2-201ENST00000385277 83 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 MIR618-201ENST00000385287 98 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 MIR548A3-201ENST00000385297 97 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 BTF3P4-201ENST00000418852 495 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 RNU6-94P-201ENST00000607728 107 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 AL136317.1-201ENST00000612653 226 ntBASIC1.8□□□□□ -2.12
TRAIPQ9BWF2 MIR378A-201ENST00000362177 66 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 SNORD113-1-201ENST00000365321 69 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 RNU6-939P-201ENST00000384634 107 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 RNU6-1104P-201ENST00000384723 104 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 MIR563-201ENST00000385080 79 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 RNU4-62P-201ENST00000410125 130 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 AP1B1P2-201ENST00000416196 106 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 RNU7-35P-201ENST00000517174 62 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 MIR4303-201ENST00000581299 66 ntBASIC1.79□□□□□ -2.12
TRAIPQ9BWF2 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 186.6 ms