Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
NKX3-1Q99801 Y_RNA.150-201ENST00000363562 102 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 Y_RNA.272-201ENST00000364696 102 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 RNU6-1237P-201ENST00000384777 107 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 RNU6-1258P-201ENST00000516911 111 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.77□□□□□ -2.29
NKX3-1Q99801 MIR4653-201ENST00000585107 83 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 AC020891.4-201ENST00000605745 93 ntBASIC0.77□□□□□ -2.29
NKX3-1Q99801 RNU1-93P-201ENST00000364704 169 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 RNU6-1130P-201ENST00000365434 107 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 SNORA75.5-201ENST00000391291 81 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 MIR1827-201ENST00000408549 66 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 RPS26P5-201ENST00000418544 335 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 U7.7-201ENST00000459276 60 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 AC113410.1-201ENST00000505029 247 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 RNU6-182P-201ENST00000516970 105 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 MIR4771-2-201ENST00000577758 74 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 MIR4771-1-201ENST00000582617 74 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 DNAJC19P2-201ENST00000593340 302 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 MIR6841-201ENST00000637129 72 ntBASIC0.76□□□□□ -2.29
NKX3-1Q99801 MIR1-1-201ENST00000362147 71 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 RNU6-349P-201ENST00000362402 107 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 Y_RNA.355-201ENST00000365462 98 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 Y_RNA.430-201ENST00000384081 110 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 MIR563-201ENST00000385080 79 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 MIR100-201ENST00000385259 80 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 SNORD37.2-201ENST00000391075 66 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 PCNPP3-201ENST00000393579 471 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 RNU6-1165P-201ENST00000410119 107 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 AC067940.1-201ENST00000458411 300 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 AC013244.2-201ENST00000603396 103 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 AC211469.2-201ENST00000605461 205 ntBASIC0.75□□□□□ -2.29
NKX3-1Q99801 HSBP1P2-201ENST00000299671 229 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR30D-201ENST00000362283 70 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 SNORA22.1-201ENST00000362701 134 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 Y_RNA.171-201ENST00000363760 102 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 RNU6-804P-201ENST00000384286 107 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 RNU6-394P-201ENST00000410735 107 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 RNU6-1110P-201ENST00000516462 101 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 RNU6-794P-201ENST00000517261 64 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR3646-201ENST00000578301 84 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR3152-201ENST00000579801 74 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR3973-201ENST00000579824 107 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR3671-201ENST00000580455 88 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 SNORA4-201ENST00000584302 138 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.74□□□□□ -2.29
NKX3-1Q99801 FTX_2.1-201ENST00000618816 94 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 MIR6767-201ENST00000637302 66 ntBASIC0.74□□□□□ -2.29
NKX3-1Q99801 Y_RNA.8-201ENST00000362353 102 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 Y_RNA.251-201ENST00000364551 99 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 RNU4-11P-201ENST00000365287 132 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 RNY1P6-201ENST00000384193 109 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 SNORA20-201ENST00000384662 132 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 MIR608-201ENST00000384820 100 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 RNA5SP261-201ENST00000410536 106 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 AC108059.2-201ENST00000434626 151 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 snoU13.18-201ENST00000459483 104 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 Y_RNA.686-201ENST00000516548 134 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 Y_RNA.757-201ENST00000578934 114 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 MIR4676-201ENST00000583078 72 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 MIR151B-201ENST00000584249 96 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.73□□□□□ -2.29
NKX3-1Q99801 FAM71BP1-201ENST00000604431 523 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 AL353765.1-201ENST00000605514 183 ntBASIC0.73□□□□□ -2.29
NKX3-1Q99801 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.73□□□□□ -2.29
NKX3-1Q99801 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.73□□□□□ -2.29
NKX3-1Q99801 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 RNU6-151P-201ENST00000364158 107 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 RNU6-309P-201ENST00000364573 106 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 Y_RNA.354-201ENST00000365448 111 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 RNU6-886P-201ENST00000384319 105 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 RNU6-342P-201ENST00000384521 104 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 RNU2-64P-201ENST00000411315 191 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.72□□□□□ -2.29
NKX3-1Q99801 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 MIR6788-201ENST00000618842 66 ntBASIC0.72□□□□□ -2.29
NKX3-1Q99801 Y_RNA.270-201ENST00000364693 104 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 MIR532-201ENST00000385025 91 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 MIR548J-201ENST00000408833 112 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 RNA5SP144-201ENST00000410846 116 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 MIR18B-201ENST00000454574 71 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 Y_RNA.651-201ENST00000459380 103 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 RNU6-977P-201ENST00000516411 103 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 AC112693.2-201ENST00000556538 232 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 MIR4804-201ENST00000581683 73 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 MIR6857-201ENST00000613267 93 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 RMST_2.1-201ENST00000617263 136 ntBASIC0.71□□□□□ -2.3
NKX3-1Q99801 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
NKX3-1Q99801 SNORD116-18-201ENST00000383961 92 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 Y_RNA.470-201ENST00000384307 117 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 MIR520F-201ENST00000384824 87 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 SNORD105-201ENST00000386910 85 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 Y_RNA.584-201ENST00000391090 114 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 AL512326.2-201ENST00000426359 151 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 RNU7-197P-201ENST00000458836 62 ntBASIC0.7□□□□□ -2.3
NKX3-1Q99801 RNU7-185P-201ENST00000459215 60 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms