Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.2□□□□□ -2.06
USHBP1Q8N6Y0 AL596028.1-201ENST00000326971 197 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-1123P-201ENST00000362347 106 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.10-201ENST00000362371 110 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 RNY3P2-201ENST00000362918 102 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 RNU1-42P-201ENST00000364033 160 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-49P-201ENST00000384256 107 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 SNORA67.5-201ENST00000391036 107 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 MIR1287-201ENST00000408492 90 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 RPS3AP1-201ENST00000413190 320 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 TRMT112P2-201ENST00000512910 132 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 MIR8055-201ENST00000610739 97 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 MIR8070-201ENST00000616510 88 ntBASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.220-201ENST00000364244 109 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 SNORD73B-201ENST00000364394 72 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 MIR488-201ENST00000365739 83 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-1190P-201ENST00000410811 104 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 RNU7-43P-201ENST00000516554 64 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 MIR4694-201ENST00000578534 80 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 MIR548AE2-201ENST00000583456 67 ntBASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.107-201ENST00000363190 121 ntBASIC2.17□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.360-201ENST00000365512 102 ntBASIC2.17□□□□□ -2.06
USHBP1Q8N6Y0 MIR1323-201ENST00000408090 73 ntBASIC2.17□□□□□ -2.06
USHBP1Q8N6Y0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.17□□□□□ -2.06
USHBP1Q8N6Y0 RNA5SP364-201ENST00000516938 78 ntBASIC2.17□□□□□ -2.06
USHBP1Q8N6Y0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-616P-201ENST00000384353 107 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 Y_RNA.558-201ENST00000384685 113 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 MIR17-201ENST00000385012 84 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 MIR577-201ENST00000385196 96 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 RNA5SP489-201ENST00000410986 109 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 AC004965.1-201ENST00000413033 213 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 RNA5SP57-201ENST00000459463 123 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 MIR4764-201ENST00000580680 88 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.16□□□□□ -2.06
USHBP1Q8N6Y0 RNU6-832P-201ENST00000363319 107 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 SNORA1.1-201ENST00000364671 133 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 SNORD48-201ENST00000364953 64 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 Y_RNA.354-201ENST00000365448 111 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-203P-201ENST00000384038 104 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 MIR520C-201ENST00000385005 87 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 MIR605-201ENST00000385078 83 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 SNORA7.5-201ENST00000410672 110 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-1018P-201ENST00000516577 106 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 BX248123.2-201ENST00000606318 124 ntBASIC2.15□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-60P-201ENST00000364792 103 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 Y_RNA.466-201ENST00000384294 113 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 MIR194-1-201ENST00000384892 85 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 RNA5SP212-201ENST00000391223 107 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 AL356379.1-201ENST00000414105 126 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 HMGN1P33-201ENST00000432945 451 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 RPS27P21-201ENST00000486977 252 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-917P-201ENST00000516294 104 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-844P-201ENST00000517175 102 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 MIR4287-201ENST00000579398 78 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 AL442128.1-201ENST00000615151 90 ntBASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
USHBP1Q8N6Y0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 MIR1270-201ENST00000459320 83 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-322P-201ENST00000516010 103 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-521P-201ENST00000516663 105 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 AL512598.1-201ENST00000610158 273 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 MALAT1.1-201ENST00000618249 95 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 AC008133.2-201ENST00000624540 351 ntBASIC2.13□□□□□ -2.07
USHBP1Q8N6Y0 SNORA32-201ENST00000384072 121 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 SNORA18-201ENST00000384416 132 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 RNY1P7-201ENST00000384743 110 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 MIR653-201ENST00000385279 96 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 RNU6-679P-201ENST00000391003 106 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 RNA5SP233-201ENST00000459153 113 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 MIR514B-201ENST00000516774 80 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 MIR3935-201ENST00000583472 104 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 MIR7111-201ENST00000619751 72 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 Z97988.1-201ENST00000637697 135 ntBASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
USHBP1Q8N6Y0 Y_RNA.342-201ENST00000365352 113 ntBASIC2.11□□□□□ -2.07
USHBP1Q8N6Y0 HMGN2P19-201ENST00000425149 265 ntBASIC2.11□□□□□ -2.07
USHBP1Q8N6Y0 AC245047.7-201ENST00000440265 293 ntBASIC2.11□□□□□ -2.07
USHBP1Q8N6Y0 SNORD53B-201ENST00000577887 78 ntBASIC2.11□□□□□ -2.07
USHBP1Q8N6Y0 MIR4299-201ENST00000577899 72 ntBASIC2.11□□□□□ -2.07
USHBP1Q8N6Y0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 SUMO2P12-201ENST00000405924 140 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AC096949.1-201ENST00000412047 152 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AC244636.1-201ENST00000421152 228 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AL353813.1-201ENST00000440700 253 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AC022254.1-201ENST00000567857 235 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AL773524.1-201ENST00000614065 229 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 uc_338.20-201ENST00000621563 178 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 AL512310.12-203ENST00000640543 90 ntBASIC2.1□□□□□ -2.07
USHBP1Q8N6Y0 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 321.3 ms