Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU7-66P-201ENST00000459469 62 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-261P-201ENST00000459506 102 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 AC108019.1-201ENST00000512540 175 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 MIR4500-201ENST00000579472 76 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 AC007485.1-201ENST00000616755 206 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.72-201ENST00000362894 103 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 MIR548A2-201ENST00000384956 97 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 AL365203.2-201ENST00000423444 196 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU7-113P-201ENST00000459273 62 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-1038P-201ENST00000516516 104 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-365P-201ENST00000517113 106 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 AL118558.2-201ENST00000556294 238 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 AL158211.2-201ENST00000607282 395 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 DLEU2_5.1-201ENST00000615567 84 ntBASIC-0.89□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.106-201ENST00000363189 100 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU6-721P-201ENST00000410155 105 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 SNORD5.1-201ENST00000458800 75 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU7-35P-201ENST00000517174 62 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AC060780.3-201ENST00000589464 80 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AC092747.3-201ENST00000603769 301 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 SNORD114-4-201ENST00000363962 75 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.419-201ENST00000384041 102 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 MIR216B-201ENST00000390186 82 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU2-55P-201ENST00000411146 174 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AC091951.2-201ENST00000500762 203 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AC124312.5-201ENST00000604451 268 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU6-626P-201ENST00000363354 107 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU6-961P-201ENST00000363893 105 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 MT-TH-201ENST00000387441 69 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 AC098826.2-201ENST00000452011 651 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 MTCO2P4-201ENST00000517968 247 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RN7SKP299-201ENST00000606679 301 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-0.9□□□□□ -2.55
CHD9Q3L8U1 RNU6-522P-201ENST00000364497 107 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.372-201ENST00000365599 102 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.473-201ENST00000384333 102 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.560-201ENST00000384689 102 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 MTND2P39-201ENST00000457230 764 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 RNU6-864P-201ENST00000516256 108 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 RNU6-126P-201ENST00000516685 103 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 MIR3915-201ENST00000578518 97 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 AL022161.1-201ENST00000604390 213 ntBASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.91□□□□□ -2.55
CHD9Q3L8U1 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 RNY1P11-201ENST00000363759 113 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 SNORD115-23-201ENST00000364461 82 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 RNU6-99P-201ENST00000364721 107 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 RNU6-571P-201ENST00000384128 107 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 MTND3P7-201ENST00000474435 343 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 AC040904.1-201ENST00000590850 223 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 AL049861.1-201ENST00000603130 150 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 AL157392.4-201ENST00000609756 345 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 AC079248.2-201ENST00000623779 326 ntBASIC-0.91□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.14-201ENST00000362415 103 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 RNA5SP86-201ENST00000390869 98 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.704-201ENST00000516851 102 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 RNU6-431P-201ENST00000383874 107 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.397-201ENST00000383950 98 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 MIRLET7B-201ENST00000385140 83 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 CEP57L1P1-201ENST00000430943 1201 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 AC083798.1-201ENST00000472671 131 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 MIR4724-201ENST00000579485 89 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 MIR548AE1-201ENST00000583292 70 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 AC024933.1-201ENST00000608472 348 ntBASIC-0.92□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU6-996P-201ENST00000365438 107 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNY3P10-201ENST00000384764 102 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU7-115P-201ENST00000516433 55 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 MIR548AG2-201ENST00000581228 64 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 YWHAEP3-201ENST00000582767 121 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 AL008718.3-201ENST00000610217 321 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 AC091932.4-201ENST00000623386 200 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU6-1323P-201ENST00000384025 107 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU6-648P-201ENST00000410190 107 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 AL353193.1-201ENST00000421444 268 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 AC244090.1-201ENST00000441884 93 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 SNORA40.17-201ENST00000517256 115 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 AC099654.14-201ENST00000638599 341 ntBASIC-0.93□□□□□ -2.56
CHD9Q3L8U1 RNY3P3-201ENST00000363816 102 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 SNORD115-35-201ENST00000365122 82 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.94□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 304.8 ms