Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR3121-201ENST00000579680 77 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 PRELID3BP2-201ENST00000605362 201 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 MIR8055-201ENST00000610739 97 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 RMST_2.1-201ENST00000617263 136 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 AP001340.1-201ENST00000624405 217 ntBASIC0.8□□□□□ -2.28
HOXC4P09017 SNORD114-2-201ENST00000363953 78 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 RNU1-133P-201ENST00000364867 167 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 Y_RNA.525-201ENST00000384570 113 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 MIR613-201ENST00000385248 95 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
HOXC4P09017 SNORA26.6-201ENST00000391256 115 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 AL603914.1-201ENST00000401964 204 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 MIR1185-1-201ENST00000408598 86 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 RNU7-96P-201ENST00000459535 64 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 SNORA31.2-201ENST00000516019 134 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 RNU6-240P-201ENST00000516098 97 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 RNU6-971P-201ENST00000516920 106 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 AP001328.1-201ENST00000528550 176 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.79□□□□□ -2.28
HOXC4P09017 AL357312.1-201ENST00000603879 298 ntBASIC0.79□□□□□ -2.28
HOXC4P09017 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.78□□□□□ -2.28
HOXC4P09017 Y_RNA.114-201ENST00000363265 113 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 SNORA40-201ENST00000388090 126 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 RNU6-910P-201ENST00000390844 107 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 RNU6-1054P-201ENST00000411293 104 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 AL392103.1-201ENST00000447000 198 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 RNU7-73P-201ENST00000458743 63 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 RNU6-1234P-201ENST00000516877 103 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 RNU6-1258P-201ENST00000516911 111 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
HOXC4P09017 AC022709.1-201ENST00000615967 87 ntBASIC0.78□□□□□ -2.28
HOXC4P09017 MIR302B-201ENST00000362188 73 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU6-235P-201ENST00000362644 107 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNA5SP264-201ENST00000363115 107 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 Y_RNA.218-201ENST00000364218 104 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU6-654P-201ENST00000364373 107 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 Y_RNA.354-201ENST00000365448 111 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 SNORD50.2-201ENST00000365465 70 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 Y_RNA.366-201ENST00000365540 102 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 SNORD18B-201ENST00000365659 72 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU6-1067P-201ENST00000384752 107 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNA5SP95-201ENST00000410319 137 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 AC063976.4-201ENST00000421971 163 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 AC244023.1-201ENST00000426884 112 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 AC245047.7-201ENST00000440265 293 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RPL39P39-201ENST00000455840 151 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU6-1211P-201ENST00000459179 105 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 snoU13.16-201ENST00000459350 104 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU7-80P-201ENST00000459562 61 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 RNU7-70P-201ENST00000516941 66 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 MIR3910-1-201ENST00000580936 111 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.77□□□□□ -2.29
HOXC4P09017 AC242498.1-201ENST00000604134 111 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 AC011603.4-201ENST00000611325 277 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 MIR6717-201ENST00000622747 73 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 MIR6516-201ENST00000630554 81 ntBASIC0.77□□□□□ -2.29
HOXC4P09017 MIR103A2-201ENST00000362154 78 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 Y_RNA.280-201ENST00000364765 112 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 RNY1P6-201ENST00000384193 109 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 SNORA75.2-201ENST00000391138 150 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 SNORA75.3-201ENST00000391231 150 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 RNU6-602P-201ENST00000411155 105 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 RNU2-35P-201ENST00000516446 142 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 Y_RNA.692-201ENST00000516627 105 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 RNU7-53P-201ENST00000516705 60 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 AC021613.1-201ENST00000623880 111 ntBASIC0.76□□□□□ -2.29
HOXC4P09017 Y_RNA.171-201ENST00000363760 102 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNA5SP48-201ENST00000363969 126 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 SNORA1.1-201ENST00000364671 133 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 SNORD114-24-201ENST00000365029 72 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU1-36P-201ENST00000365130 165 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-690P-201ENST00000365242 106 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 Y_RNA.454-201ENST00000384224 113 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 SNORD12C-201ENST00000386307 89 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-1319P-201ENST00000390855 104 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-747P-201ENST00000390928 104 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-241P-201ENST00000391148 104 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-177P-201ENST00000411257 104 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 MTATP6P21-201ENST00000440681 189 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU7-107P-201ENST00000459121 61 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 RNU6-781P-201ENST00000516377 101 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 MIR5000-201ENST00000577717 103 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 U7.2-201ENST00000607576 63 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 uc_338.6-201ENST00000613544 171 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 MIR6841-201ENST00000637129 72 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 Z97988.1-201ENST00000637697 135 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
HOXC4P09017 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.74□□□□□ -2.29
HOXC4P09017 AL157777.2-201ENST00000258070 137 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 RNU6-81P-201ENST00000365608 104 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 MIR200A-201ENST00000384875 90 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 RNA5SP144-201ENST00000410846 116 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 RNU4-61P-201ENST00000411243 107 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 Y_RNA.630-201ENST00000411370 108 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 AL512326.2-201ENST00000426359 151 ntBASIC0.74□□□□□ -2.29
HOXC4P09017 AL158147.1-201ENST00000443970 75 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 253.5 ms