Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU1-58P-201ENST00000362413 163 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-681P-201ENST00000364012 104 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 RNU1-112P-201ENST00000364401 164 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 AL138827.1-201ENST00000402666 306 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 AC245517.4-201ENST00000448601 281 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 RN7SL633P-201ENST00000488974 297 ntBASIC3.9□□□□□ -1.79
CCDC61Q9Y6R9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 RNA5SP383-201ENST00000362934 120 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 Y_RNA.119-201ENST00000363301 96 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 Y_RNA.371-201ENST00000365591 113 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-291P-201ENST00000384720 107 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 SCARNA16.3-201ENST00000516595 184 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 MIR548AO-201ENST00000579992 96 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 MIR4764-201ENST00000580680 88 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 MIR8053-201ENST00000613344 75 ntBASIC3.89□□□□□ -1.79
CCDC61Q9Y6R9 Y_RNA.42-201ENST00000362660 108 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 SNORD90-201ENST00000391145 111 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 RNA5SP21-201ENST00000410917 96 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 AC079150.2-201ENST00000443733 78 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 MIR4644-201ENST00000579929 84 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 MIR3675-201ENST00000583661 73 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 AL096861.1-201ENST00000610899 123 ntBASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC61Q9Y6R9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-340P-201ENST00000364005 107 ntBASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 MIR29C-201ENST00000385231 88 ntBASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 AC021506.2-201ENST00000612354 169 ntBASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC61Q9Y6R9 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 RNY4P3-201ENST00000365254 95 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 MIR196B-201ENST00000384852 84 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 AC019129.1-201ENST00000403786 261 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 snoU13.17-201ENST00000458802 104 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 RN7SL442P-201ENST00000473804 320 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 MIR3124-201ENST00000582636 67 ntBASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC61Q9Y6R9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-859P-201ENST00000362728 107 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-669P-201ENST00000365575 107 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 SNORD45A-201ENST00000384512 84 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 MIR633-201ENST00000384821 98 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 MIR520C-201ENST00000385005 87 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 RNU2-7P-201ENST00000410794 178 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 RNU6-881P-201ENST00000516813 102 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 AC121758.2-201ENST00000553271 193 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 MIR3935-201ENST00000583472 104 ntBASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC61Q9Y6R9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 SNORA46-201ENST00000384762 135 ntBASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 AC110620.1-201ENST00000416042 228 ntBASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 MIR4709-201ENST00000577272 72 ntBASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 MIR3616-201ENST00000584070 92 ntBASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC61Q9Y6R9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC61Q9Y6R9 RNU6-1051P-201ENST00000365471 102 ntBASIC3.83□□□□□ -1.8
CCDC61Q9Y6R9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC61Q9Y6R9 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.83□□□□□ -1.8
CCDC61Q9Y6R9 MIR4251-201ENST00000635819 61 ntBASIC3.83□□□□□ -1.8
CCDC61Q9Y6R9 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC61Q9Y6R9 Y_RNA.207-201ENST00000364142 106 ntBASIC3.82□□□□□ -1.8
CCDC61Q9Y6R9 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC61Q9Y6R9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC61Q9Y6R9 MAPK10-362ENST00000641864 4484 ntBASIC3.82□□□□□ -1.8
CCDC61Q9Y6R9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC61Q9Y6R9 SNORA67.4-201ENST00000384688 142 ntBASIC3.81□□□□□ -1.8
CCDC61Q9Y6R9 RPS29P12-201ENST00000460178 152 ntBASIC3.81□□□□□ -1.8
CCDC61Q9Y6R9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 MIR337-201ENST00000362281 93 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 RNU6-1216P-201ENST00000362590 107 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 RNU6-957P-201ENST00000363652 99 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 RNA5SP68-201ENST00000363885 119 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 MIR520A-201ENST00000384862 85 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 MIR4435-1-201ENST00000582552 80 ntBASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC61Q9Y6R9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 MIR512-1-201ENST00000384913 84 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 AL513328.1-201ENST00000446460 224 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 snoU13.2-201ENST00000459201 104 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 RNU7-170P-201ENST00000459303 61 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 AC069503.3-201ENST00000618674 145 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 U7.8-201ENST00000619968 63 ntBASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
CCDC61Q9Y6R9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC61Q9Y6R9 SNORD45.1-201ENST00000363181 77 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 238.1 ms