Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 Y_RNA.506-201ENST00000384494 102 ntBASIC1.04□□□□□ -2.24
LIMA1Q9UHB6 RNU7-200P-201ENST00000516105 62 ntBASIC1.04□□□□□ -2.24
LIMA1Q9UHB6 MIR2115-201ENST00000516657 100 ntBASIC1.04□□□□□ -2.24
LIMA1Q9UHB6 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 RNU6-654P-201ENST00000364373 107 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 MIR942-201ENST00000401111 86 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 RNU6-1190P-201ENST00000410811 104 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 AC090844.1-201ENST00000422019 156 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 TRMT112P2-201ENST00000512910 132 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 AC112693.2-201ENST00000556538 232 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 AC091932.4-201ENST00000623386 200 ntBASIC1.03□□□□□ -2.24
LIMA1Q9UHB6 RNU6-508P-201ENST00000363231 103 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU6-396P-201ENST00000365369 105 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU6-613P-201ENST00000410412 108 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU7-73P-201ENST00000458743 63 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU2-11P-201ENST00000459191 187 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU7-96P-201ENST00000459535 64 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 PDCD5P2-201ENST00000507570 312 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 RNU6-958P-201ENST00000516995 106 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 MIR4661-201ENST00000582720 75 ntBASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.02□□□□□ -2.25
LIMA1Q9UHB6 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 RNU6-53P-201ENST00000365367 106 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.400-201ENST00000383963 111 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 MIR569-201ENST00000385228 96 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 SNORD37.2-201ENST00000391075 66 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 AL035398.1-201ENST00000430869 322 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 HMGN1P33-201ENST00000432945 451 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 RNU7-67P-201ENST00000459003 62 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 snoU13.16-201ENST00000459350 104 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 RNU6-1053P-201ENST00000515930 101 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 AC036111.3-201ENST00000526389 112 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 MIR8055-201ENST00000610739 97 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 AC106800.4-201ENST00000614905 153 ntBASIC1.01□□□□□ -2.25
LIMA1Q9UHB6 MIR342-201ENST00000362212 99 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.351-201ENST00000365436 96 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 RNU6-1062P-201ENST00000383908 107 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 RNU6-460P-201ENST00000391158 108 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 SNORA26.6-201ENST00000391256 115 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 RNU7-45P-201ENST00000459460 63 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 RNU6-346P-201ENST00000516288 111 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.686-201ENST00000516548 134 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 AL020996.3-201ENST00000606617 222 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.215-201ENST00000364204 112 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 SNORD113.3-201ENST00000364630 78 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNY1P5-201ENST00000383890 115 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNU6-125P-201ENST00000384505 107 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 SNORD111-201ENST00000408139 94 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNA5SP95-201ENST00000410319 137 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNU6-321P-201ENST00000410912 106 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 POLR2J4-204ENST00000418424 324 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 FABP5P4-201ENST00000437203 171 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNA5SP272-201ENST00000516095 111 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 SNORA25.12-201ENST00000516202 82 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNU6-94P-201ENST00000607728 107 ntBASIC0.99□□□□□ -2.25
LIMA1Q9UHB6 RNU6-392P-201ENST00000364926 101 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 SNORA2B-201ENST00000384583 137 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.584-201ENST00000391090 114 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 Y_RNA.651-201ENST00000459380 103 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 RNU7-53P-201ENST00000516705 60 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 MIR548X2-201ENST00000579776 100 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 Z97988.1-201ENST00000637697 135 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 AL596211.1-201ENST00000569873 2277 ntBASIC0.98□□□□□ -2.25
LIMA1Q9UHB6 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNU6-349P-201ENST00000362402 107 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNU6-774P-201ENST00000363238 107 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 SNORA20-201ENST00000384662 132 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 MT-TN-201ENST00000387400 73 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNU7-80P-201ENST00000459562 61 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNA5SP255-201ENST00000516370 107 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 RNU6-426P-201ENST00000516464 97 ntBASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
LIMA1Q9UHB6 MIR337-201ENST00000362281 93 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RNY1P10-201ENST00000363268 113 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.120-201ENST00000363304 110 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.168-201ENST00000363740 102 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RNU6-309P-201ENST00000364573 106 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RNU1-133P-201ENST00000364867 167 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.420-201ENST00000384043 110 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RNU6-994P-201ENST00000410507 111 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RNU6-602P-201ENST00000411155 105 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 RPS3AP1-201ENST00000413190 320 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 AC244023.1-201ENST00000426884 112 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 MIR3133-201ENST00000583157 78 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 AC242498.1-201ENST00000604134 111 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 MIR6717-201ENST00000622747 73 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 MIR6841-201ENST00000637129 72 ntBASIC0.96□□□□□ -2.26
LIMA1Q9UHB6 MIR377-201ENST00000362145 69 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 RNU4-16P-201ENST00000364737 141 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.454-201ENST00000384224 113 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 MIR532-201ENST00000385025 91 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 201.3 ms