Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIR6828-201ENST00000636181 60 ntBASIC-0.11□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 RNU6-888P-201ENST00000363010 101 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.197-201ENST00000364004 102 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 SNORA26.6-201ENST00000391256 115 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 RNA5SP237-201ENST00000410414 113 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 RNU6-938P-201ENST00000411285 103 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 AC069271.1-201ENST00000445577 156 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 RNU6-765P-201ENST00000516916 99 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 AP001282.2-201ENST00000616149 309 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 AC090574.1-201ENST00000623186 233 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 AC139792.2-201ENST00000624218 587 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 MTND4LP32-201ENST00000636111 270 ntBASIC-0.12□□□□□ -2.43
SHANK3Q9BYB0 SNORD113-8-201ENST00000363497 74 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-949P-201ENST00000384040 107 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 HSPE1P25-201ENST00000455484 251 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-893P-201ENST00000458841 100 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 AC074198.2-201ENST00000508153 258 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-475P-201ENST00000516073 104 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 SNORA31.14-201ENST00000516728 116 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 MIR4639-201ENST00000584938 69 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-652P-201ENST00000365488 107 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 SNORD61-201ENST00000384252 73 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-535P-201ENST00000384722 107 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 SNORD12C-201ENST00000386307 89 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 SNORD115-46-201ENST00000390982 71 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU4-83P-201ENST00000410863 133 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-976P-201ENST00000516086 111 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 RNU6-782P-201ENST00000516852 104 ntBASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.13□□□□□ -2.43
SHANK3Q9BYB0 MIR342-201ENST00000362212 99 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 RNU6-653P-201ENST00000363074 106 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 MIR145-201ENST00000384967 88 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 AC010655.3-201ENST00000478818 450 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 RNU6-191P-201ENST00000516295 94 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 AC138869.1-201ENST00000568623 124 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 MIR6082-201ENST00000613604 109 ntBASIC-0.14□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.5-201ENST00000362334 102 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.634-201ENST00000364811 113 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 SNORD28-201ENST00000384706 75 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 SNORA32.3-201ENST00000384772 121 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 MIR1207-201ENST00000408249 87 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 SNORA27.4-201ENST00000516650 95 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 AC104985.2-201ENST00000620598 500 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 MIR6717-201ENST00000622747 73 ntBASIC-0.15□□□□□ -2.43
SHANK3Q9BYB0 RNU6-403P-201ENST00000363163 104 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.248-201ENST00000364501 109 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 SNORD24-201ENST00000383884 75 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 RNU6-484P-201ENST00000384016 107 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 Y_RNA.418-201ENST00000384029 102 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 MIR643-201ENST00000385267 97 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 MIR526A2-201ENST00000390198 65 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 RNU6-130P-201ENST00000411112 103 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 FGF7P4-201ENST00000509595 295 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 RNU6-397P-201ENST00000516226 104 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 RNA5SP153-201ENST00000516498 76 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 RNA5SP47-201ENST00000517230 109 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 AC037487.3-201ENST00000606668 112 ntBASIC-0.16□□□□□ -2.43
SHANK3Q9BYB0 SNORA32.1-201ENST00000364514 115 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.569-201ENST00000384749 103 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 RNU6-269P-201ENST00000391077 97 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 MIR1302-11-201ENST00000408051 138 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 MIR1302-9-201ENST00000408365 138 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 MIR1302-10-201ENST00000408734 138 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.632-201ENST00000459189 102 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 MIR1302-2-201ENST00000607096 138 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 AC244669.1-204ENST00000621564 178 ntBASIC-0.16□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.70-201ENST00000362886 110 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.229-201ENST00000364347 113 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 RNA5SP128-201ENST00000365305 116 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 MIR593-201ENST00000384856 100 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 MIR760-201ENST00000390220 80 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 AL138752.1-201ENST00000452964 351 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 RNU7-159P-201ENST00000459284 62 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.661-201ENST00000516003 99 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1299P-201ENST00000516316 100 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 RNU6-1270P-201ENST00000517128 108 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 MTND5P34-201ENST00000568888 325 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 MIR5706-201ENST00000579841 80 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.802-201ENST00000614892 130 ntBASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.17□□□□□ -2.44
SHANK3Q9BYB0 UBE2WP1-201ENST00000362030 340 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.183-201ENST00000363882 113 ntBASIC-0.18□□□□□ -2.44
SHANK3Q9BYB0 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 350 ms