Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 MIR3658-201ENST00000636291 56 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 MIR302B-201ENST00000362188 73 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 Y_RNA.29-201ENST00000362570 113 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 SNORA25.7-201ENST00000364375 127 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 Y_RNA.240-201ENST00000364469 95 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 RNU4-38P-201ENST00000364472 129 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 SNORD114-24-201ENST00000365029 72 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 RNU6-1335P-201ENST00000365426 107 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 RNU6-597P-201ENST00000365620 102 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 Y_RNA.393-201ENST00000383936 102 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 MIR624-201ENST00000385217 97 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 SNORD12C-201ENST00000386307 89 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 AC015818.7-201ENST00000428754 109 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 AC087499.7-201ENST00000441958 109 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 MIR4661-201ENST00000582720 75 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 MIR6717-201ENST00000622747 73 ntBASIC0.84□□□□□ -2.27
NKX3-1Q99801 MIR96-201ENST00000362288 78 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 Y_RNA.118-201ENST00000363300 101 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 Y_RNA.168-201ENST00000363740 102 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 SNORA1.1-201ENST00000364671 133 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 RNU6-580P-201ENST00000365159 107 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 RNU6-1318P-201ENST00000365389 103 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 SNORD38B-201ENST00000384690 67 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 SNORD111-201ENST00000408139 94 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 RNU6-588P-201ENST00000410281 105 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 RPL39P28-201ENST00000465655 155 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 AC107027.2-201ENST00000512197 115 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 AP000753.3-201ENST00000604083 169 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 MIR6740-201ENST00000618268 113 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 SNORD38B-202ENST00000625943 69 ntBASIC0.83□□□□□ -2.28
NKX3-1Q99801 RNU4-84P-201ENST00000364200 139 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 RNU6-818P-201ENST00000364837 108 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 MIR200A-201ENST00000384875 90 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 MT-TN-201ENST00000387400 73 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 SNORD89-201ENST00000390981 114 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 SNORD83.1-201ENST00000411362 77 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 POLR2J4-204ENST00000418424 324 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 RNU7-80P-201ENST00000459562 61 ntBASIC0.82□□□□□ -2.28
NKX3-1Q99801 RNU6-369P-201ENST00000362515 102 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 Y_RNA.52-201ENST00000362760 96 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 Y_RNA.357-201ENST00000365487 109 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 Y_RNA.785-201ENST00000384290 109 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 RPS29P1-201ENST00000465274 159 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 PDCD5P2-201ENST00000507570 312 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 RNA5SP220-201ENST00000516298 104 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 RNU7-121P-201ENST00000516604 62 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 RNU6-113P-201ENST00000516653 101 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 MIR4264-201ENST00000583520 66 ntBASIC0.81□□□□□ -2.28
NKX3-1Q99801 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
NKX3-1Q99801 Y_RNA.116-201ENST00000363292 103 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNU4-16P-201ENST00000364737 141 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNU1-133P-201ENST00000364867 167 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 Y_RNA.337-201ENST00000365312 102 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 MIR520E-201ENST00000384867 87 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 MIR588-201ENST00000384900 83 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNU6-239P-201ENST00000390990 99 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNU6-994P-201ENST00000410507 111 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNU7-62P-201ENST00000458856 62 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 Y_RNA.662-201ENST00000516028 97 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 RNA5SP255-201ENST00000516370 107 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 Y_RNA.700-201ENST00000516806 100 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.8□□□□□ -2.28
NKX3-1Q99801 MIR4698-201ENST00000577795 80 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 MIR6844-201ENST00000637122 62 ntBASIC0.8□□□□□ -2.28
NKX3-1Q99801 MIR377-201ENST00000362145 69 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 Y_RNA.441-201ENST00000384123 112 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 Y_RNA.454-201ENST00000384224 113 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 Y_RNA.497-201ENST00000384447 98 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU6-1319P-201ENST00000390855 104 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU6-747P-201ENST00000390928 104 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU6-241P-201ENST00000391148 104 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU6-1135P-201ENST00000411083 103 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU6-177P-201ENST00000411257 104 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 RNU7-70P-201ENST00000516941 66 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 AC023934.1-201ENST00000574529 2389 ntBASIC0.79□□□□□ -2.28
NKX3-1Q99801 AC010332.2-201ENST00000613083 1904 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU6-508P-201ENST00000363231 103 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU6-934P-201ENST00000365154 107 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU6-42P-201ENST00000384165 107 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 Y_RNA.508-201ENST00000384502 114 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 MIR605-201ENST00000385078 83 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 MIR518E-201ENST00000385252 88 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RPS3AP1-201ENST00000413190 320 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 FABP5P4-201ENST00000437203 171 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 snoU13.2-201ENST00000459201 104 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNA5SP236-201ENST00000516169 116 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 RNU2-60P-201ENST00000517290 128 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 AC104465.1-201ENST00000611365 139 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 AC021613.1-201ENST00000623880 111 ntBASIC0.78□□□□□ -2.28
NKX3-1Q99801 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
NKX3-1Q99801 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.78□□□□□ -2.29
NKX3-1Q99801 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
NKX3-1Q99801 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms