Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 Y_RNA.351-201ENST00000365436 96 ntBASIC0.05□□□□□ -2.4
CCDC43Q96MW1 RNU6-484P-201ENST00000384016 107 ntBASIC0.05□□□□□ -2.4
CCDC43Q96MW1 RNU2-55P-201ENST00000411146 174 ntBASIC0.05□□□□□ -2.4
CCDC43Q96MW1 AL512326.2-201ENST00000426359 151 ntBASIC0.05□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.28-201ENST00000362554 111 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 RNU6-403P-201ENST00000363163 104 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.431-201ENST00000384086 102 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 RNY3P14-201ENST00000384309 102 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 MT-TT-201ENST00000387460 66 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 RNA5SP237-201ENST00000410414 113 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 RNA5SP261-201ENST00000410536 106 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.622-201ENST00000411091 108 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.04□□□□□ -2.4
CCDC43Q96MW1 SNRPGP8-201ENST00000454064 226 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 RNA5SP268-201ENST00000516828 124 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 MIR6718-201ENST00000616153 80 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 AL662814.1-201ENST00000617364 121 ntBASIC0.04□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.13-201ENST00000362403 112 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.115-201ENST00000363272 98 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.304-201ENST00000365011 112 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 Y_RNA.432-201ENST00000384087 111 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 SNORA1-201ENST00000384107 130 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 AC069271.1-201ENST00000445577 156 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 MIR371B-201ENST00000638082 66 ntBASIC0.03□□□□□ -2.4
CCDC43Q96MW1 UBE2WP1-201ENST00000362030 340 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.26-201ENST00000362539 101 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 RNU6-653P-201ENST00000363074 106 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 RNU6-1099P-201ENST00000363533 107 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 MIR1197-201ENST00000408818 88 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 RNA5SP153-201ENST00000516498 76 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 AL109933.3-201ENST00000619095 188 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 MIR376A2-201ENST00000636782 80 ntBASIC0.02□□□□□ -2.41
CCDC43Q96MW1 RNA5SP214-201ENST00000363378 118 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 SNORA42.1-201ENST00000363515 137 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 RNU6-1289P-201ENST00000384431 106 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 U8.15-201ENST00000390947 134 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 RNU6-1228P-201ENST00000391014 107 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 SEPT7P4-201ENST00000437076 306 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.01□□□□□ -2.41
CCDC43Q96MW1 RNU6-988P-201ENST00000519081 107 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 MIR4801-201ENST00000582704 82 ntBASIC0.01□□□□□ -2.41
CCDC43Q96MW1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0□□□□□ -2.41
CCDC43Q96MW1 MIR411-201ENST00000362239 96 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.64-201ENST00000362845 102 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.152-201ENST00000363578 100 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.258-201ENST00000364613 105 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 RNU6-474P-201ENST00000384243 107 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 SCARNA24.2-201ENST00000516968 130 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 MIR6082-201ENST00000613604 109 ntBASIC0□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.210-201ENST00000364161 110 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 RNY3P5-201ENST00000384127 102 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 SUMO1P3-201ENST00000439961 304 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 RNU7-80P-201ENST00000459562 61 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 SERF1AP1-201ENST00000514575 187 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 SNORA31.14-201ENST00000516728 116 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 MIR3152-201ENST00000579801 74 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 MIR6755-201ENST00000619993 66 ntBASIC-0.01□□□□□ -2.41
CCDC43Q96MW1 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 SNORD114-9-201ENST00000364370 72 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 MIR4491-201ENST00000581087 68 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 AC097639.2-201ENST00000603159 172 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 MIR7107-201ENST00000611489 80 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 AL596211.1-201ENST00000569873 2277 ntBASIC-0.02□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.84-201ENST00000363011 104 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.276-201ENST00000364732 109 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 Y_RNA.430-201ENST00000384081 110 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 AL606845.1-201ENST00000404881 255 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 MTND5P22-201ENST00000458380 195 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 RNU6-453P-201ENST00000516819 85 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 MIR3129-201ENST00000581095 76 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 AC104408.1-201ENST00000605241 170 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 AC091932.4-201ENST00000623386 200 ntBASIC-0.03□□□□□ -2.41
CCDC43Q96MW1 SNORA9.1-201ENST00000362412 131 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.275-201ENST00000364726 110 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 SNORA72.6-201ENST00000384520 129 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 PCNPP3-201ENST00000393579 471 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 AC022028.1-201ENST00000412054 408 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 RNA5SP227-201ENST00000516184 113 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 RNU6-1338P-201ENST00000516328 91 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 AC141846.1-201ENST00000568348 142 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.04□□□□□ -2.42
CCDC43Q96MW1 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.05□□□□□ -2.42
CCDC43Q96MW1 RNU6-187P-201ENST00000384139 106 ntBASIC-0.05□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.05□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.455-201ENST00000384230 98 ntBASIC-0.05□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.527-201ENST00000384573 102 ntBASIC-0.05□□□□□ -2.42
CCDC43Q96MW1 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 170.9 ms