Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RPS23P4-201ENST00000487908 423 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-426P-201ENST00000516464 97 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 Y_RNA.692-201ENST00000516627 105 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-548P-201ENST00000517083 115 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 MIR3683-201ENST00000580847 82 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 MIR3945-201ENST00000581853 98 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 MIR4781-201ENST00000585250 76 ntBASIC1.17□□□□□ -2.22
CCDC28AQ8IWP9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 MIR504-201ENST00000385065 83 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 MIR517C-201ENST00000385103 95 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 RNA5SP144-201ENST00000410846 116 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 snoU13.2-201ENST00000459201 104 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 RNU6-240P-201ENST00000516098 97 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 AC133485.4-201ENST00000561835 220 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 AC138907.4-201ENST00000570107 226 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 BX248123.2-201ENST00000606318 124 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 AC012676.2-201ENST00000619258 186 ntBASIC1.16□□□□□ -2.22
CCDC28AQ8IWP9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.15□□□□□ -2.22
CCDC28AQ8IWP9 MIR588-201ENST00000384900 83 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 SNORD12C-201ENST00000386307 89 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-994P-201ENST00000410507 111 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 AL022718.1-201ENST00000412004 84 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 POLR2J4-204ENST00000418424 324 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RN7SL429P-201ENST00000479090 223 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RN7SL489P-201ENST00000486185 223 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RN7SL327P-201ENST00000488659 223 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RNU5E-3P-201ENST00000515913 68 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.757-201ENST00000578934 114 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 U7.2-201ENST00000607576 63 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 RN7SL853P-201ENST00000617250 223 ntBASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC28AQ8IWP9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-508P-201ENST00000363231 103 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 SNORA67.6-201ENST00000391093 99 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-346P-201ENST00000516288 111 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.703-201ENST00000516846 111 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 AC068338.1-201ENST00000565567 176 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 MIR4305-201ENST00000583252 102 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 AC021443.1-201ENST00000604478 211 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-94P-201ENST00000607728 107 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 MIR6740-201ENST00000618268 113 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 AC010332.2-201ENST00000613083 1904 ntBASIC1.14□□□□□ -2.23
CCDC28AQ8IWP9 SNORD114-24-201ENST00000365029 72 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.568-201ENST00000384742 113 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 MIR1261-201ENST00000408659 82 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-1165P-201ENST00000410119 107 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 FABP5P4-201ENST00000437203 171 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 AC067940.1-201ENST00000458411 300 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 SNORD124-201ENST00000459577 104 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 MIR3121-201ENST00000579680 77 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.13□□□□□ -2.23
CCDC28AQ8IWP9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 RNA5SP190-201ENST00000365222 118 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-746P-201ENST00000384112 109 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 MIR563-201ENST00000385080 79 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 MIR942-201ENST00000401111 86 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 RNA5SP237-201ENST00000410414 113 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 RNA5SP272-201ENST00000516095 111 ntBASIC1.12□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.366-201ENST00000365540 102 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 MIR18B-201ENST00000454574 71 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 RNU7-113P-201ENST00000459273 62 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 AC113410.1-201ENST00000505029 247 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 SNORA31.24-201ENST00000517232 57 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 MIR3133-201ENST00000583157 78 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 TUG1_4.1-201ENST00000619464 181 ntBASIC1.11□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.171-201ENST00000363760 102 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 SNORA40-201ENST00000388090 126 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 SNORA67.5-201ENST00000391036 107 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 MIR1289-2-201ENST00000408360 111 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 RPS29P28-201ENST00000446439 141 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 RNU7-164P-201ENST00000459221 62 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 OR2A41P-201ENST00000473586 105 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 AL137067.1-201ENST00000615933 120 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 AC091895.1-201ENST00000624494 256 ntBASIC1.1□□□□□ -2.23
CCDC28AQ8IWP9 Y_RNA.114-201ENST00000363265 113 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-647P-201ENST00000364243 107 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 MT-TF-201ENST00000387314 71 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 RNU6-1258P-201ENST00000516911 111 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 AC108081.1-201ENST00000604358 221 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 AL662814.1-201ENST00000617364 121 ntBASIC1.09□□□□□ -2.23
CCDC28AQ8IWP9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
CCDC28AQ8IWP9 SNORD115-2-201ENST00000362842 82 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-774P-201ENST00000363238 107 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 SNORD115-20-201ENST00000365099 82 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-934P-201ENST00000365154 107 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 MIR1323-201ENST00000408090 73 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 MTND4LP9-201ENST00000427694 174 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 snoU13.21-201ENST00000459368 105 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 RNU2-35P-201ENST00000516446 142 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 AC004812.1-201ENST00000540773 146 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 AL136317.1-201ENST00000612653 226 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 uc_338.6-201ENST00000613544 171 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 295.8 ms