Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL158147.1-201ENST00000443970 75 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 RNU1-92P-201ENST00000517017 135 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 MIR8065-201ENST00000620577 100 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 MIR6717-201ENST00000622747 73 ntBASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-508P-201ENST00000363231 103 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AL354695.1-201ENST00000427935 228 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AC245047.7-201ENST00000440265 293 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 SNORA31.24-201ENST00000517232 57 ntBASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
PTCHD3Q3KNS1 SNORA1.1-201ENST00000364671 133 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-690P-201ENST00000365242 106 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 Y_RNA.354-201ENST00000365448 111 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 MIR1302-7-201ENST00000408841 72 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RNU6-321P-201ENST00000410912 106 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 RPS3AP1-201ENST00000413190 320 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC133485.4-201ENST00000561835 220 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 AC138907.4-201ENST00000570107 226 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 MIR4781-201ENST00000585250 76 ntBASIC1.41□□□□□ -2.18
PTCHD3Q3KNS1 SNORD113-1-201ENST00000365321 69 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-80P-201ENST00000384195 107 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-959P-201ENST00000384671 107 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 AL359821.1-201ENST00000605519 182 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 ZNF209P-201ENST00000593450 2304 ntBASIC1.4□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-396P-201ENST00000365369 105 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 SNORD38B-201ENST00000384690 67 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MT-TN-201ENST00000387400 73 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR1185-1-201ENST00000408598 86 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.617-201ENST00000410920 90 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1211P-201ENST00000459179 105 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AC048334.1-201ENST00000477975 159 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-240P-201ENST00000516098 97 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR2115-201ENST00000516657 100 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-971P-201ENST00000516920 106 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AL137067.1-201ENST00000615933 120 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 SNORD38B-202ENST00000625943 69 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 MIR6841-201ENST00000637129 72 ntBASIC1.39□□□□□ -2.19
PTCHD3Q3KNS1 AL161722.3-201ENST00000605789 2983 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR103A2-201ENST00000362154 78 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA25.3-201ENST00000363205 127 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA7.1-201ENST00000363750 139 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP144-201ENST00000410846 116 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNU7-45P-201ENST00000459460 63 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 TRMT112P2-201ENST00000512910 132 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNU5E-3P-201ENST00000515913 68 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RN7SKP19-201ENST00000516016 252 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 SNORA31.2-201ENST00000516019 134 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP61-201ENST00000516453 100 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR4421-201ENST00000578133 69 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 MIR4305-201ENST00000583252 102 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 HSPE1P19-201ENST00000603327 295 ntBASIC1.38□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.294-201ENST00000364916 102 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1190P-201ENST00000410811 104 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 POLR2J4-204ENST00000418424 324 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 AC108081.1-201ENST00000604358 221 ntBASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PTCHD3Q3KNS1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 SNORA22.1-201ENST00000362701 134 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.366-201ENST00000365540 102 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-602P-201ENST00000411155 105 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AL022718.1-201ENST00000412004 84 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 RN7SKP179-201ENST00000516126 217 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AC021443.1-201ENST00000604478 211 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 AL157834.3-201ENST00000615543 103 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.36□□□□□ -2.19
PTCHD3Q3KNS1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SNORD115-2-201ENST00000362842 82 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.71-201ENST00000362892 104 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SNORD115-20-201ENST00000365099 82 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-1117P-201ENST00000384525 104 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU6-613P-201ENST00000410412 108 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNA5SP136-201ENST00000410906 107 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 HMGN1P33-201ENST00000432945 451 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR4264-201ENST00000583520 66 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 SEPT14P17-201ENST00000617978 177 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 MIR6516-201ENST00000630554 81 ntBASIC1.35□□□□□ -2.19
PTCHD3Q3KNS1 RNU4-16P-201ENST00000364737 141 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORD26-201ENST00000384147 75 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORA80D-201ENST00000384488 135 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 SNORD12-201ENST00000391002 90 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 AC090844.1-201ENST00000422019 156 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 RPS29P23-201ENST00000458635 123 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 RNU7-164P-201ENST00000459221 62 ntBASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.34□□□□□ -2.19
PTCHD3Q3KNS1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
PTCHD3Q3KNS1 MIR377-201ENST00000362145 69 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 MIR337-201ENST00000362281 93 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 Y_RNA.218-201ENST00000364218 104 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 Y_RNA.298-201ENST00000364960 107 ntBASIC1.33□□□□□ -2.2
PTCHD3Q3KNS1 AL591704.2-201ENST00000421658 181 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 191.2 ms