Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 MIR6516-201ENST00000630554 81 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 MIR342-201ENST00000362212 99 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 RNU6-913P-201ENST00000390913 95 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 RNU6-613P-201ENST00000410412 108 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.08□□□□□ -2.24
SHMT1P34896 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.08□□□□□ -2.24
SHMT1P34896 RNU7-121P-201ENST00000516604 62 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 HSPE1P19-201ENST00000603327 295 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 MIR8055-201ENST00000610739 97 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 MIR6857-201ENST00000613267 93 ntBASIC1.08□□□□□ -2.24
SHMT1P34896 Y_RNA.354-201ENST00000365448 111 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 SNORA22-201ENST00000383907 134 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 SNORA22C-201ENST00000384614 134 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 MT-TN-201ENST00000387400 73 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 MIR548I3-201ENST00000408378 149 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 RNA5SP261-201ENST00000410536 106 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 RNU6-1135P-201ENST00000411083 103 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 OR2A41P-201ENST00000473586 105 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 MIR4698-201ENST00000577795 80 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.07□□□□□ -2.24
SHMT1P34896 MIR6734-201ENST00000621166 68 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 MIR6844-201ENST00000637122 62 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 Z97988.1-201ENST00000637697 135 ntBASIC1.07□□□□□ -2.24
SHMT1P34896 SNORA1.1-201ENST00000364671 133 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 SNORD38B-201ENST00000384690 67 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 SNORA75.5-201ENST00000391291 81 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 RNU5E-9P-201ENST00000411164 104 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.06□□□□□ -2.24
SHMT1P34896 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.06□□□□□ -2.24
SHMT1P34896 AP000753.3-201ENST00000604083 169 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 AL020996.3-201ENST00000606617 222 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 AC091932.4-201ENST00000623386 200 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 SNORD38B-202ENST00000625943 69 ntBASIC1.06□□□□□ -2.24
SHMT1P34896 SNORD113.3-201ENST00000364630 78 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 RNU6-818P-201ENST00000364837 108 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 RNU1-133P-201ENST00000364867 167 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 MIR200A-201ENST00000384875 90 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 SNORD111-201ENST00000408139 94 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 RNU2-64P-201ENST00000411315 191 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 RNU6-1149P-201ENST00000516810 97 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 SCARNA15-202ENST00000516881 127 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 RNU6-1223P-201ENST00000517124 104 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 MIR4264-201ENST00000583520 66 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 DNAJC19P2-201ENST00000593340 302 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 AC012676.2-201ENST00000619258 186 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
SHMT1P34896 AL596211.1-201ENST00000569873 2277 ntBASIC1.05□□□□□ -2.24
SHMT1P34896 MIR377-201ENST00000362145 69 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 RNU6-654P-201ENST00000364373 107 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 RNU6-1082P-201ENST00000364574 107 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 Y_RNA.270-201ENST00000364693 104 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 AC036111.3-201ENST00000526389 112 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 MIR3152-201ENST00000579801 74 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 AC131055.1-201ENST00000584626 316 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 FAM71BP1-201ENST00000604431 523 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 AC106800.4-201ENST00000614905 153 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 FTX_2.1-201ENST00000618816 94 ntBASIC1.04□□□□□ -2.24
SHMT1P34896 Y_RNA.272-201ENST00000364696 102 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 RNU6-1336P-201ENST00000383886 109 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 RNU6-125P-201ENST00000384505 107 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 AC090844.1-201ENST00000422019 156 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 CYP3A137P-201ENST00000562436 69 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 AC023827.1-201ENST00000569247 97 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.03□□□□□ -2.24
SHMT1P34896 AC098479.1-201ENST00000609225 154 ntBASIC1.03□□□□□ -2.24
SHMT1P34896 MTND5P32-201ENST00000560711 1802 ntBASIC1.03□□□□□ -2.25
SHMT1P34896 Y_RNA.168-201ENST00000363740 102 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 SNORD114-24-201ENST00000365029 72 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 SNORA2B-201ENST00000384583 137 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RNU6-1319P-201ENST00000390855 104 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RNU6-747P-201ENST00000390928 104 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 SNORD37.2-201ENST00000391075 66 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RNU6-241P-201ENST00000391148 104 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RNU6-177P-201ENST00000411257 104 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 RPS3AP1-201ENST00000413190 320 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 AC074198.2-201ENST00000508153 258 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.02□□□□□ -2.25
SHMT1P34896 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 MIR6717-201ENST00000622747 73 ntBASIC1.02□□□□□ -2.25
SHMT1P34896 Y_RNA.52-201ENST00000362760 96 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 RNU6-580P-201ENST00000365159 107 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 AC244023.1-201ENST00000426884 112 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 HMGN1P33-201ENST00000432945 451 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 FABP5P4-201ENST00000437203 171 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 AC242498.1-201ENST00000604134 111 ntBASIC1.01□□□□□ -2.25
SHMT1P34896 RNU6-886P-201ENST00000384319 105 ntBASIC1□□□□□ -2.25
SHMT1P34896 SNORA20-201ENST00000384662 132 ntBASIC1□□□□□ -2.25
SHMT1P34896 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1□□□□□ -2.25
SHMT1P34896 SNORA26.6-201ENST00000391256 115 ntBASIC1□□□□□ -2.25
SHMT1P34896 RNU6-588P-201ENST00000410281 105 ntBASIC1□□□□□ -2.25
SHMT1P34896 RNA5SP95-201ENST00000410319 137 ntBASIC1□□□□□ -2.25
SHMT1P34896 RNU6-1190P-201ENST00000410811 104 ntBASIC1□□□□□ -2.25
SHMT1P34896 RNU6-602P-201ENST00000411155 105 ntBASIC1□□□□□ -2.25
SHMT1P34896 SNORD124-201ENST00000459577 104 ntBASIC1□□□□□ -2.25
SHMT1P34896 UBL5P1-201ENST00000507979 193 ntBASIC1□□□□□ -2.25
SHMT1P34896 MIR5000-201ENST00000577717 103 ntBASIC1□□□□□ -2.25
SHMT1P34896 MIR3668-201ENST00000582138 75 ntBASIC1□□□□□ -2.25
SHMT1P34896 AL391516.1-201ENST00000554380 2449 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 223.1 ms