Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 Y_RNA.351-201ENST00000365436 96 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 Y_RNA.393-201ENST00000383936 102 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 AC090844.1-201ENST00000422019 156 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 HMGN1P33-201ENST00000432945 451 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.05□□□□□ -2.24
HOXC9P31274 SNORD124-201ENST00000459577 104 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 OR2A41P-201ENST00000473586 105 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 RNU6-998P-201ENST00000515894 101 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 MIR2115-201ENST00000516657 100 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 RNU6-861P-201ENST00000516745 106 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 RNU11-2P-201ENST00000516898 142 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 SNORA81.3-201ENST00000517283 198 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
HOXC9P31274 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
HOXC9P31274 MIR302B-201ENST00000362188 73 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 SNORA25.7-201ENST00000364375 127 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 SNORA2B-201ENST00000384583 137 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 MIR548I3-201ENST00000408378 149 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 RNU6-1190P-201ENST00000410811 104 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 RNA5SP127-201ENST00000411051 133 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 AC107027.2-201ENST00000512197 115 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 RNU6-351P-201ENST00000516097 100 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 AL596211.1-201ENST00000569873 2277 ntBASIC1.04□□□□□ -2.24
HOXC9P31274 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.04□□□□□ -2.24
HOXC9P31274 SNORD114-2-201ENST00000363953 78 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-312P-201ENST00000364629 107 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 Y_RNA.357-201ENST00000365487 109 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-1292P-201ENST00000383856 107 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-125P-201ENST00000384505 107 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-768P-201ENST00000384683 107 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-205P-201ENST00000390858 107 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU7-73P-201ENST00000458743 63 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU7-70P-201ENST00000516941 66 ntBASIC1.03□□□□□ -2.24
HOXC9P31274 RNU6-1318P-201ENST00000365389 103 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 MIR19B1-201ENST00000384829 87 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 RNU7-45P-201ENST00000459460 63 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.02□□□□□ -2.25
HOXC9P31274 AC131055.1-201ENST00000584626 316 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 HSPE1P19-201ENST00000603327 295 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 RNU6-94P-201ENST00000607728 107 ntBASIC1.02□□□□□ -2.25
HOXC9P31274 Y_RNA.36-201ENST00000362602 112 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU1-124P-201ENST00000363861 145 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 SNORA1.1-201ENST00000364671 133 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 MIR942-201ENST00000401111 86 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU6-613P-201ENST00000410412 108 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU5E-9P-201ENST00000411164 104 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU7-120P-201ENST00000459334 63 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU7-80P-201ENST00000459562 61 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 Y_RNA.662-201ENST00000516028 97 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 AC036111.3-201ENST00000526389 112 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 AP000753.3-201ENST00000604083 169 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 AC012676.2-201ENST00000619258 186 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 AC091932.4-201ENST00000623386 200 ntBASIC1.01□□□□□ -2.25
HOXC9P31274 RNU6-682P-201ENST00000363843 106 ntBASIC1□□□□□ -2.25
HOXC9P31274 Y_RNA.337-201ENST00000365312 102 ntBASIC1□□□□□ -2.25
HOXC9P31274 MIR624-201ENST00000385217 97 ntBASIC1□□□□□ -2.25
HOXC9P31274 RNU6-994P-201ENST00000410507 111 ntBASIC1□□□□□ -2.25
HOXC9P31274 Y_RNA.700-201ENST00000516806 100 ntBASIC1□□□□□ -2.25
HOXC9P31274 RNU6-1149P-201ENST00000516810 97 ntBASIC1□□□□□ -2.25
HOXC9P31274 AC004792.1-201ENST00000614523 137 ntBASIC1□□□□□ -2.25
HOXC9P31274 SNORD113.3-201ENST00000364630 78 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 RNU6-597P-201ENST00000365620 102 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 Y_RNA.454-201ENST00000384224 113 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 Y_RNA.785-201ENST00000384290 109 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 UBL5P1-201ENST00000507979 193 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 AC074198.2-201ENST00000508153 258 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 AC133485.1-201ENST00000567176 124 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 AC138907.6-201ENST00000568401 126 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 AC106800.4-201ENST00000614905 153 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 MIR6835-201ENST00000621552 64 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 MTND5P32-201ENST00000560711 1802 ntBASIC0.99□□□□□ -2.25
HOXC9P31274 Y_RNA.240-201ENST00000364469 95 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 RNU6-1082P-201ENST00000364574 107 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 SNORD38B-201ENST00000384690 67 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 MIR508-201ENST00000384857 115 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 RNU6-239P-201ENST00000390990 99 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 RN7SL793P-201ENST00000583259 296 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 MIR8055-201ENST00000610739 97 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 SNORD38B-202ENST00000625943 69 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 MIR3658-201ENST00000636291 56 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 MIR6844-201ENST00000637122 62 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 Z97988.1-201ENST00000637697 135 ntBASIC0.98□□□□□ -2.25
HOXC9P31274 RNU4-84P-201ENST00000364200 139 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 SNORD114-24-201ENST00000365029 72 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 SNORD37.2-201ENST00000391075 66 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 SNORD111-201ENST00000408139 94 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 RNU6-182P-201ENST00000516970 105 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.97□□□□□ -2.25
HOXC9P31274 MIR4264-201ENST00000583520 66 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 MIR6513-201ENST00000621188 64 ntBASIC0.97□□□□□ -2.25
HOXC9P31274 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.97□□□□□ -2.25
HOXC9P31274 Y_RNA.52-201ENST00000362760 96 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 RNU4-16P-201ENST00000364737 141 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 MIR200A-201ENST00000384875 90 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 MT-TN-201ENST00000387400 73 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 AC244023.1-201ENST00000426884 112 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 AC067940.1-201ENST00000458411 300 ntBASIC0.96□□□□□ -2.26
HOXC9P31274 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms