Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MIR3914-2-201ENST00000637339 95 ntBASIC1.53□□□□□ -2.16
FOXN3O00409 Y_RNA.617-201ENST00000410920 90 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 RNU2-11P-201ENST00000459191 187 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 AC107297.1-201ENST00000459991 176 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 RPS29P24-201ENST00000486345 171 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 RNU6-1053P-201ENST00000515930 101 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 SNORA31.4-201ENST00000516049 129 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 RN7SKP179-201ENST00000516126 217 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 RNU6-958P-201ENST00000516995 106 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 AL137067.1-201ENST00000615933 120 ntBASIC1.52□□□□□ -2.17
FOXN3O00409 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
FOXN3O00409 MIR302B-201ENST00000362188 73 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNU6-349P-201ENST00000362402 107 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-34-201ENST00000362441 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-12-201ENST00000362583 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-29-201ENST00000362834 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-9-201ENST00000362912 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-21-201ENST00000362963 81 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-14-201ENST00000363090 81 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-13-201ENST00000363358 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-41-201ENST00000363608 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-11-201ENST00000363616 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-5-201ENST00000363633 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-39-201ENST00000363694 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-4-201ENST00000363810 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-16-201ENST00000363887 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-6-201ENST00000363942 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-42-201ENST00000364273 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-15-201ENST00000364809 81 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-1-201ENST00000364961 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-26-201ENST00000365067 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-10-201ENST00000365073 81 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-43-201ENST00000365503 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-36-201ENST00000365629 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNY1P6-201ENST00000384193 109 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 MIR222-201ENST00000384992 110 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNU6-1190P-201ENST00000410811 104 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNU7-67P-201ENST00000459003 62 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNU6-998P-201ENST00000515894 101 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNU2-13P-201ENST00000515909 113 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 RNY4P20-201ENST00000516678 93 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 Y_RNA.712-201ENST00000517011 92 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 SNORD115-40-201ENST00000606510 82 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 AC025166.1-201ENST00000612411 163 ntBASIC1.51□□□□□ -2.17
FOXN3O00409 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.51□□□□□ -2.17
FOXN3O00409 MIR378A-201ENST00000362177 66 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 RNA5SP327-201ENST00000362494 101 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 Y_RNA.353-201ENST00000365440 108 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 SNORA51.10-201ENST00000384418 136 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 RNU6-429P-201ENST00000384582 108 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 Y_RNA.537-201ENST00000384626 109 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 MIR548A1-201ENST00000385041 97 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 Y_RNA.629-201ENST00000411368 105 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 BTF3P4-201ENST00000418852 495 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 AC021443.1-201ENST00000604478 211 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 MIR4251-201ENST00000635819 61 ntBASIC1.5□□□□□ -2.17
FOXN3O00409 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
FOXN3O00409 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
FOXN3O00409 RNU6-1325P-201ENST00000364905 105 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 Y_RNA.528-201ENST00000384575 108 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 RNU6-476P-201ENST00000384726 107 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 MIR150-201ENST00000385048 84 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 RNU4-62P-201ENST00000410125 130 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 HMGN1P33-201ENST00000432945 451 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 RNU7-80P-201ENST00000459562 61 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 AC019288.1-201ENST00000557918 224 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 AC022523.2-201ENST00000561045 150 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 snoU13.31-201ENST00000607291 104 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 MIR4791-201ENST00000607666 84 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 MTND5P18-201ENST00000445624 1801 ntBASIC1.49□□□□□ -2.17
FOXN3O00409 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.49□□□□□ -2.17
FOXN3O00409 Y_RNA.273-201ENST00000364703 102 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU6-44P-201ENST00000384045 107 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU6-910P-201ENST00000390844 107 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU6-913P-201ENST00000390913 95 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU6-1064P-201ENST00000410626 104 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 AL035398.1-201ENST00000430869 322 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU7-164P-201ENST00000459221 62 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU7-96P-201ENST00000459535 64 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 RNU7-123P-201ENST00000515911 60 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 AC243994.1-201ENST00000618627 109 ntBASIC1.48□□□□□ -2.17
FOXN3O00409 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.47□□□□□ -2.17
FOXN3O00409 RNU6-1056P-201ENST00000383996 107 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 SNORA24-201ENST00000384096 131 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 Y_RNA.454-201ENST00000384224 113 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 MIR548A3-201ENST00000385297 97 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 RNU6-1054P-201ENST00000411293 104 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 AC245047.7-201ENST00000440265 293 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 RPS29P29-201ENST00000456396 171 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 RNU2-35P-201ENST00000516446 142 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 MIR4781-201ENST00000585250 76 ntBASIC1.47□□□□□ -2.17
FOXN3O00409 MIR103A2-201ENST00000362154 78 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 SNORA63.4-201ENST00000362763 126 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 RNA5SP48-201ENST00000363969 126 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 RNU6-215P-201ENST00000365169 102 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 MIRLET7F2-201ENST00000385277 83 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 snoU13.25-201ENST00000458945 104 ntBASIC1.46□□□□□ -2.18
FOXN3O00409 Y_RNA.649-201ENST00000459077 103 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 186.4 ms