Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-112P-201ENST00000363599 104 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 RNU4-16P-201ENST00000364737 141 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.344-201ENST00000365381 112 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 RNU2-11P-201ENST00000459191 187 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 RNA5SP481-201ENST00000516814 122 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 AC022523.2-201ENST00000561045 150 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 MIR4781-201ENST00000585250 76 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 snoU13.31-201ENST00000607291 104 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 AC021613.1-201ENST00000623880 111 ntBASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.348-201ENST00000365403 103 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.370-201ENST00000365589 108 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 Y_RNA.544-201ENST00000384650 113 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 MIR516B2-201ENST00000385190 85 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 SNORD23.1-201ENST00000408212 104 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 RNA5SP144-201ENST00000410846 116 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 RNA5SP501-201ENST00000410990 112 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 AL022718.1-201ENST00000412004 84 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 SNORA72.7-201ENST00000516349 94 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 RNU7-6P-201ENST00000516845 62 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 U1.36-201ENST00000620684 176 ntBASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-905P-201ENST00000384434 107 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-296P-201ENST00000384608 107 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 AC093850.1-201ENST00000454121 251 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 RNU6-893P-201ENST00000458841 100 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 SNORA31.4-201ENST00000516049 129 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 RNU1-40P-201ENST00000516816 164 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 RNU1-97P-201ENST00000516872 164 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 RNA5SP437-201ENST00000517249 129 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 AC004812.1-201ENST00000540773 146 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 MIR4709-201ENST00000577272 72 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 MIR3152-201ENST00000579801 74 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 MIR6895-201ENST00000613497 78 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.34□□□□□ -2.03
USHBP1Q8N6Y0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
USHBP1Q8N6Y0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 SNORA16.1-201ENST00000364597 132 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 Y_RNA.531-201ENST00000384589 121 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 MIR144-201ENST00000384886 86 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 RNU7-34P-201ENST00000459394 64 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 SNORA40.13-201ENST00000516379 120 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 RNU2-19P-201ENST00000517288 84 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 AC021506.2-201ENST00000612354 169 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 AL513423.1-201ENST00000621695 132 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 AL162726.3-218ENST00000636401 95 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 AP000553.5-201ENST00000641933 54 ntBASIC2.33□□□□□ -2.04
USHBP1Q8N6Y0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 Y_RNA.78-201ENST00000362970 110 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 SNORA70.7-201ENST00000384159 133 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-1319P-201ENST00000390855 104 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-747P-201ENST00000390928 104 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-241P-201ENST00000391148 104 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNA5SP450-201ENST00000411206 102 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-177P-201ENST00000411257 104 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 AL512326.2-201ENST00000426359 151 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU7-67P-201ENST00000459003 62 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 snoU13.27-201ENST00000459278 104 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 AC055731.1-201ENST00000474387 401 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 AC079804.2-201ENST00000490376 200 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-958P-201ENST00000516995 106 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 MIR4529-201ENST00000578110 78 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 MIR6840-201ENST00000611937 71 ntBASIC2.32□□□□□ -2.04
USHBP1Q8N6Y0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 SNORA16B-201ENST00000364674 135 ntBASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 MIR1912-201ENST00000410389 80 ntBASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 AP1B1P2-201ENST00000416196 106 ntBASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-640P-201ENST00000363693 105 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 Y_RNA.299-201ENST00000364973 94 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 SNORA51.10-201ENST00000384418 136 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-1067P-201ENST00000384752 107 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 MIR660-201ENST00000385235 97 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 POLR2J4-204ENST00000418424 324 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 RPL39P25-201ENST00000449384 154 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 RPS23P4-201ENST00000487908 423 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 RNU7-53P-201ENST00000516705 60 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 MIR548AR-201ENST00000582191 57 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 AC087741.2-201ENST00000619415 172 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 SNORD3E-202ENST00000627253 216 ntBASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.3□□□□□ -2.04
USHBP1Q8N6Y0 Y_RNA.226-201ENST00000364337 114 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 MIR590-201ENST00000385008 97 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-816P-201ENST00000390914 107 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-1268P-201ENST00000391214 107 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-1239P-201ENST00000391310 107 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNA5SP261-201ENST00000410536 106 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-321P-201ENST00000410912 106 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 PGBD4P5-201ENST00000445958 426 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RPS29P29-201ENST00000456396 171 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU2-13P-201ENST00000515909 113 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 RNU6-970P-201ENST00000516312 107 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 Y_RNA.818-201ENST00000618813 71 ntBASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
USHBP1Q8N6Y0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 239.5 ms