Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SNORD115-5-201ENST00000363633 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-39-201ENST00000363694 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-4-201ENST00000363810 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 Y_RNA.182-201ENST00000363880 111 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-16-201ENST00000363887 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-6-201ENST00000363942 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-42-201ENST00000364273 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-15-201ENST00000364809 81 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-1-201ENST00000364961 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-26-201ENST00000365067 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-10-201ENST00000365073 81 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-43-201ENST00000365503 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-36-201ENST00000365629 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 Y_RNA.489-201ENST00000384410 101 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 RNU4-70P-201ENST00000384579 139 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 RNU2-64P-201ENST00000411315 191 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 AF228730.3-201ENST00000436691 102 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD36C-201ENST00000516733 66 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.8□□□□□ -2.28
TNFRSF4P43489 MIR548AO-201ENST00000579992 96 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 SNORD115-40-201ENST00000606510 82 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 AC134878.1-201ENST00000619901 243 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 MIR6835-201ENST00000621552 64 ntBASIC0.8□□□□□ -2.28
TNFRSF4P43489 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
TNFRSF4P43489 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.79□□□□□ -2.28
TNFRSF4P43489 Y_RNA.23-201ENST00000362496 106 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 SNORD114-2-201ENST00000363953 78 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 SNORA27-201ENST00000384323 126 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 Y_RNA.494-201ENST00000384432 111 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 Y_RNA.571-201ENST00000384753 98 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 RNU6-578P-201ENST00000390980 103 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 SNORA40.5-201ENST00000391061 128 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 SNORD58.1-201ENST00000391313 66 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 Y_RNA.618-201ENST00000410949 107 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 RNU6-938P-201ENST00000411285 103 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.79□□□□□ -2.28
TNFRSF4P43489 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 SNORA18.4-201ENST00000516440 124 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 RNU6-958P-201ENST00000516995 106 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 RNU6-1271P-201ENST00000517049 105 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
TNFRSF4P43489 AC133485.1-201ENST00000567176 124 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 AC138907.6-201ENST00000568401 126 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 MIR4308-201ENST00000580634 81 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 AP000942.4-201ENST00000604811 241 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
TNFRSF4P43489 MIR342-201ENST00000362212 99 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 Y_RNA.188-201ENST00000363952 111 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 Y_RNA.200-201ENST00000364018 102 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 RNU6-1189P-201ENST00000383958 107 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 Y_RNA.401-201ENST00000383965 117 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
TNFRSF4P43489 AL138752.1-201ENST00000452964 351 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 RPS29P24-201ENST00000486345 171 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 MIR2115-201ENST00000516657 100 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 RNU11-2P-201ENST00000516898 142 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 MIR4714-201ENST00000580728 77 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 MIR3129-201ENST00000581095 76 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 RN7SL793P-201ENST00000583259 296 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 AC131055.1-201ENST00000584626 316 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 AC097639.2-201ENST00000603159 172 ntBASIC0.78□□□□□ -2.28
TNFRSF4P43489 MIR411-201ENST00000362239 96 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 Y_RNA.83-201ENST00000363005 113 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RNU6-654P-201ENST00000364373 107 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RNU6-1187P-201ENST00000364771 110 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RNU6-396P-201ENST00000365369 105 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 SNORA1-201ENST00000384107 130 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 SNORA2B-201ENST00000384583 137 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 MIR1302-7-201ENST00000408841 72 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RNA5SP95-201ENST00000410319 137 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 snoU13.16-201ENST00000459350 104 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RPL39P28-201ENST00000465655 155 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 RNU2-13P-201ENST00000515909 113 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 MIR6516-201ENST00000630554 81 ntBASIC0.77□□□□□ -2.29
TNFRSF4P43489 Y_RNA.121-201ENST00000363309 113 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 Y_RNA.410-201ENST00000383992 113 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 RNU6-994P-201ENST00000410507 111 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 RNU4-43P-201ENST00000410628 137 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.76□□□□□ -2.29
TNFRSF4P43489 AL392103.1-201ENST00000447000 198 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 SNORD116-25-201ENST00000516517 92 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 RNU7-53P-201ENST00000516705 60 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 MIR6779-201ENST00000617283 64 ntBASIC0.76□□□□□ -2.29
TNFRSF4P43489 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.76□□□□□ -2.29
TNFRSF4P43489 RNU6-1020P-201ENST00000363684 107 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 RNU6-643P-201ENST00000384018 107 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 SNORA24-201ENST00000384096 131 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 MIR216A-201ENST00000385063 110 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 AC067940.1-201ENST00000458411 300 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 RNU7-96P-201ENST00000459535 64 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 AC130289.1-201ENST00000577321 73 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 Z83818.1-201ENST00000603584 150 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 RNU6-94P-201ENST00000607728 107 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 MIR6513-201ENST00000621188 64 ntBASIC0.75□□□□□ -2.29
TNFRSF4P43489 RNU6-275P-201ENST00000364910 107 ntBASIC0.74□□□□□ -2.29
TNFRSF4P43489 Y_RNA.412-201ENST00000384001 104 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 227.4 ms