Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MTND1P7-201ENST00000632801 297 ntBASIC1.18□□□□□ -2.22
SHMT1P34896 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
SHMT1P34896 SNORA25.3-201ENST00000363205 127 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 Y_RNA.118-201ENST00000363300 101 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 RNU6-978P-201ENST00000364371 103 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 Y_RNA.494-201ENST00000384432 111 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 MIR489-201ENST00000384923 84 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
SHMT1P34896 SNORD12-201ENST00000391002 90 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 snoU13.16-201ENST00000459350 104 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 RPS29P24-201ENST00000486345 171 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 MIR3129-201ENST00000581095 76 ntBASIC1.17□□□□□ -2.22
SHMT1P34896 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SHMT1P34896 SNORA25.7-201ENST00000364375 127 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 Y_RNA.357-201ENST00000365487 109 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 MTND5P15-201ENST00000434246 349 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 snoU13.18-201ENST00000459483 104 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 AC107027.2-201ENST00000512197 115 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 SNORD79.1-201ENST00000516069 84 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 RNU7-53P-201ENST00000516705 60 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 RNU6-794P-201ENST00000517261 64 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 MIR3973-201ENST00000579824 107 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 MIR3671-201ENST00000580455 88 ntBASIC1.16□□□□□ -2.22
SHMT1P34896 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SHMT1P34896 RNU6-1318P-201ENST00000365389 103 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 Y_RNA.363-201ENST00000365529 113 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 Y_RNA.440-201ENST00000384120 114 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 Y_RNA.521-201ENST00000384560 114 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 RNU7-96P-201ENST00000459535 64 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 RNU6-182P-201ENST00000516970 105 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 RNU6-958P-201ENST00000516995 106 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.15□□□□□ -2.23
SHMT1P34896 AC004792.1-201ENST00000614523 137 ntBASIC1.15□□□□□ -2.23
SHMT1P34896 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
SHMT1P34896 Y_RNA.240-201ENST00000364469 95 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 RNU6-597P-201ENST00000365620 102 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 MIR532-201ENST00000385025 91 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 MIR1185-1-201ENST00000408598 86 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 RNA5SP127-201ENST00000411051 133 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 AL035398.1-201ENST00000430869 322 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 SEPT7P4-201ENST00000437076 306 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 RNU7-73P-201ENST00000458743 63 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 Y_RNA.662-201ENST00000516028 97 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 RNA5SP220-201ENST00000516298 104 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.14□□□□□ -2.23
SHMT1P34896 MIR5197-201ENST00000583721 112 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 AC090425.1-201ENST00000610007 140 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 AC027335.2-201ENST00000624030 375 ntBASIC1.14□□□□□ -2.23
SHMT1P34896 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SHMT1P34896 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
SHMT1P34896 Y_RNA.337-201ENST00000365312 102 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 RNU6-396P-201ENST00000365369 105 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 RNU6-42P-201ENST00000384165 107 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 MIR548J-201ENST00000408833 112 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 MRPL35P3-201ENST00000421557 364 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.13□□□□□ -2.23
SHMT1P34896 AL392103.1-201ENST00000447000 198 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 RNU7-21P-201ENST00000459430 62 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 RNU7-80P-201ENST00000459562 61 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 RNU6-998P-201ENST00000515894 101 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 MIR548AO-201ENST00000579992 96 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 AL078603.1-201ENST00000603824 313 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 SEPT14P17-201ENST00000617978 177 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 MIR6788-201ENST00000618842 66 ntBASIC1.13□□□□□ -2.23
SHMT1P34896 Y_RNA.393-201ENST00000383936 102 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 MIR624-201ENST00000385217 97 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 RNU6-239P-201ENST00000390990 99 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 SNORA75.2-201ENST00000391138 150 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 SNORA75.3-201ENST00000391231 150 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 AC063976.4-201ENST00000421971 163 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 RNU7-90P-201ENST00000459216 62 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 RNU6-861P-201ENST00000516745 106 ntBASIC1.12□□□□□ -2.23
SHMT1P34896 RNU6-682P-201ENST00000363843 106 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 Y_RNA.330-201ENST00000365230 109 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 Y_RNA.351-201ENST00000365436 96 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 Y_RNA.454-201ENST00000384224 113 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 MIR1302-7-201ENST00000408841 72 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 AC002429.1-201ENST00000437672 148 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 RNU7-40P-201ENST00000516397 64 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 MIR2115-201ENST00000516657 100 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 AC022709.1-201ENST00000615967 87 ntBASIC1.11□□□□□ -2.23
SHMT1P34896 RNU4-84P-201ENST00000364200 139 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 MIR19B1-201ENST00000384829 87 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 AC108059.2-201ENST00000434626 151 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 RNU2-11P-201ENST00000459191 187 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 RNA5SP404-201ENST00000517118 132 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 AC211469.2-201ENST00000605461 205 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 MIR376A2-201ENST00000636782 80 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 AC008163.1-202ENST00000636004 2889 ntBASIC1.1□□□□□ -2.23
SHMT1P34896 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
SHMT1P34896 MIR302B-201ENST00000362188 73 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 RNU1-124P-201ENST00000363861 145 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 Y_RNA.441-201ENST00000384123 112 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 RNU6-768P-201ENST00000384683 107 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 RNU7-70P-201ENST00000516941 66 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 MIR3646-201ENST00000578301 84 ntBASIC1.09□□□□□ -2.23
SHMT1P34896 MIR151B-201ENST00000584249 96 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 199.9 ms