Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORD115-42-201ENST00000364273 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-15-201ENST00000364809 81 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-1-201ENST00000364961 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-26-201ENST00000365067 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-10-201ENST00000365073 81 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-43-201ENST00000365503 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-36-201ENST00000365629 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 Y_RNA.537-201ENST00000384626 109 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
HOXC9P31274 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
HOXC9P31274 RPS26P48-201ENST00000491713 339 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-40-201ENST00000606510 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 MTND1P7-201ENST00000632801 297 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 RNU6-643P-201ENST00000384018 107 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 SNORA80D-201ENST00000384488 135 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 MIR1185-1-201ENST00000408598 86 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 RNU4-43P-201ENST00000410628 137 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 Y_RNA.793-201ENST00000411222 111 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 AC006461.1-201ENST00000412637 326 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 AL138752.1-201ENST00000452964 351 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 Y_RNA.644-201ENST00000459006 113 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 RNU6-138P-201ENST00000515952 107 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 Y_RNA.674-201ENST00000516362 113 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 MIR4714-201ENST00000580728 77 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 PRELID3BP2-201ENST00000605362 201 ntBASIC1.13□□□□□ -2.23
HOXC9P31274 AC008163.1-202ENST00000636004 2889 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 MIR342-201ENST00000362212 99 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 RNU6-1189P-201ENST00000383958 107 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 SNORA27-201ENST00000384323 126 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 SNORA40.5-201ENST00000391061 128 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 AC004941.2-201ENST00000427009 228 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 SNORD79.1-201ENST00000516069 84 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 RNU6-1219P-201ENST00000516143 112 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 SNORD116-25-201ENST00000516517 92 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 RNU6-958P-201ENST00000516995 106 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 MIR548AO-201ENST00000579992 96 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 MIR378D2-201ENST00000580636 98 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 AC103810.9-201ENST00000606688 112 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 AC027335.2-201ENST00000624030 375 ntBASIC1.12□□□□□ -2.23
HOXC9P31274 Y_RNA.75-201ENST00000362927 97 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 Y_RNA.257-201ENST00000364596 102 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 RNU6-200P-201ENST00000364743 107 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 SNORA70.7-201ENST00000384159 133 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 SNORD77.3-201ENST00000391113 65 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 AC063976.4-201ENST00000421971 163 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.11□□□□□ -2.23
HOXC9P31274 AP002392.1-201ENST00000537692 208 ntBASIC1.11□□□□□ -2.23
HOXC9P31274 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
HOXC9P31274 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.1□□□□□ -2.23
HOXC9P31274 Y_RNA.233-201ENST00000364407 101 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.1□□□□□ -2.23
HOXC9P31274 MTND5P15-201ENST00000434246 349 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 RPS29P24-201ENST00000486345 171 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 RNU2-13P-201ENST00000515909 113 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 AP003716.2-201ENST00000528260 108 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 AC023827.1-201ENST00000569247 97 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 MIR6779-201ENST00000617283 64 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 MIR376A2-201ENST00000636782 80 ntBASIC1.1□□□□□ -2.23
HOXC9P31274 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
HOXC9P31274 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
HOXC9P31274 RNU6-978P-201ENST00000364371 103 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 Y_RNA.410-201ENST00000383992 113 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 Y_RNA.435-201ENST00000384095 112 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 Y_RNA.521-201ENST00000384560 114 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 SEPT7P4-201ENST00000437076 306 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 RNU7-21P-201ENST00000459430 62 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 MRPS18CP4-201ENST00000535821 231 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 AC090425.1-201ENST00000610007 140 ntBASIC1.09□□□□□ -2.23
HOXC9P31274 RNU6-654P-201ENST00000364373 107 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 Y_RNA.542-201ENST00000384641 111 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 MIR1302-7-201ENST00000408841 72 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 RNA5SP95-201ENST00000410319 137 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 AC002429.1-201ENST00000437672 148 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 RNA5SP404-201ENST00000517118 132 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 SEPT14P17-201ENST00000617978 177 ntBASIC1.08□□□□□ -2.24
HOXC9P31274 SNORA24-201ENST00000384096 131 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 Y_RNA.440-201ENST00000384120 114 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 SNORD12-201ENST00000391002 90 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.07□□□□□ -2.24
HOXC9P31274 RNU2-11P-201ENST00000459191 187 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 RNU7-90P-201ENST00000459216 62 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 snoU13.16-201ENST00000459350 104 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 RNU7-53P-201ENST00000516705 60 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 AL365205.2-201ENST00000594586 68 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 AC072026.1-201ENST00000605023 201 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 MIR6516-201ENST00000630554 81 ntBASIC1.07□□□□□ -2.24
HOXC9P31274 RNU6-1336P-201ENST00000383886 109 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 RNU6-913P-201ENST00000390913 95 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 AL035398.1-201ENST00000430869 322 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 AL392103.1-201ENST00000447000 198 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 RNU7-96P-201ENST00000459535 64 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.06□□□□□ -2.24
HOXC9P31274 MIR4431-201ENST00000579990 94 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 MIR5197-201ENST00000583721 112 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 AL020996.3-201ENST00000606617 222 ntBASIC1.06□□□□□ -2.24
HOXC9P31274 Y_RNA.29-201ENST00000362570 113 ntBASIC1.05□□□□□ -2.24
HOXC9P31274 RNU6-396P-201ENST00000365369 105 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 199.8 ms