Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.531-201ENST00000384589 121 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 MIR548D2-201ENST00000384955 97 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 JTBP1-201ENST00000441314 247 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RPS29P11-201ENST00000496507 171 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 RNA5SP364-201ENST00000516938 78 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 AL020996.3-201ENST00000606617 222 ntBASIC2.09□□□□□ -2.07
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.171-201ENST00000363760 102 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-1014P-201ENST00000383940 103 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORA51.10-201ENST00000384418 136 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-1067P-201ENST00000384752 107 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR653-201ENST00000385279 96 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR1289-2-201ENST00000408360 111 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AL445685.2-201ENST00000422551 342 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU7-43P-201ENST00000516554 64 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU7-6P-201ENST00000516845 62 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-1258P-201ENST00000516911 111 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 DNAJC19P9-201ENST00000555084 351 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC022254.1-201ENST00000567857 235 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR3152-201ENST00000579801 74 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR4764-201ENST00000580680 88 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR6717-201ENST00000622747 73 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR6841-201ENST00000637129 72 ntBASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AL596028.1-201ENST00000326971 197 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORA22.1-201ENST00000362701 134 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.49-201ENST00000362714 112 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.323-201ENST00000365157 109 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORA40.18-201ENST00000391200 128 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC244636.1-201ENST00000421152 228 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RPS23P4-201ENST00000487908 423 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.07□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.163-201ENST00000363702 113 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNA5SP259-201ENST00000365541 109 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR513A1-201ENST00000385138 129 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNA5SP89-201ENST00000410300 108 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNA5SP261-201ENST00000410536 106 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-893P-201ENST00000458841 100 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU7-113P-201ENST00000459273 62 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 snoU13.15-201ENST00000459407 104 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RPL39P34-201ENST00000477141 156 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-168P-201ENST00000516189 101 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-94P-201ENST00000607728 107 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC008133.2-201ENST00000624540 351 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 ZNF355P-201ENST00000427301 3216 ntBASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.430-201ENST00000384081 110 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR520C-201ENST00000385005 87 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR9-3-201ENST00000385084 90 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 HMGN1P33-201ENST00000432945 451 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 snoU13.16-201ENST00000459350 104 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC068339.1-201ENST00000526965 141 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR4287-201ENST00000579398 78 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC087741.2-201ENST00000619415 172 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 uc_338.20-201ENST00000621563 178 ntBASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-661P-201ENST00000362409 107 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-1298P-201ENST00000362456 101 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORD115-2-201ENST00000362842 82 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 U8.6-201ENST00000364939 135 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORD115-20-201ENST00000365099 82 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-32P-201ENST00000383948 107 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-13P-201ENST00000384248 107 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-12P-201ENST00000384604 107 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-41P-201ENST00000384741 107 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNU6-322P-201ENST00000516010 103 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR5009-201ENST00000578736 100 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR3935-201ENST00000583472 104 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AL513534.2-201ENST00000603836 250 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.04□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AP000648.3-201ENST00000623539 4507 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 SNORA16.1-201ENST00000364597 132 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.470-201ENST00000384307 117 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.495-201ENST00000384435 112 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 U8.13-201ENST00000390842 128 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR1302-5-201ENST00000408164 150 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 AC113410.1-201ENST00000505029 247 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 MIR8055-201ENST00000610739 97 ntBASIC2.03□□□□□ -2.08
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.299-201ENST00000364973 94 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.309-201ENST00000365046 111 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AL451046.2-201ENST00000403074 277 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AC019129.1-201ENST00000403786 261 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR4299-201ENST00000577899 72 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 SNORA77B-201ENST00000578179 125 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR4713-201ENST00000582691 75 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 MIR6845-201ENST00000613182 61 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 AL162726.3-218ENST00000636401 95 ntBASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 RNU6-766P-201ENST00000362478 107 ntBASIC2.01□□□□□ -2.09
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.328-201ENST00000365208 113 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms