Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNORA24-201ENST00000384096 131 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 MIR573-201ENST00000384964 99 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 MT-TN-201ENST00000387400 73 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 MIR1197-201ENST00000408818 88 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 RNU2-70P-201ENST00000410718 179 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 AC023449.1-201ENST00000454464 154 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.641-201ENST00000459414 105 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 MTCO2P24-201ENST00000515611 426 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 SNORD77.4-201ENST00000516158 81 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 RNU6-988P-201ENST00000519081 107 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 AC113195.1-201ENST00000579952 141 ntBASIC0.4□□□□□ -2.35
TM9SF3Q9HD45 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.37-201ENST00000362606 108 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 RNU6-514P-201ENST00000384208 107 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 SNORD61-201ENST00000384252 73 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 RNU6-651P-201ENST00000411040 105 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 snoU13.16-201ENST00000459350 104 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.711-201ENST00000516993 102 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 AP003733.2-201ENST00000529409 171 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 MIR4804-201ENST00000581683 73 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 MIR4676-201ENST00000583078 72 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 MIR4264-201ENST00000583520 66 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 MIR3171-201ENST00000584270 74 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 AP000942.4-201ENST00000604811 241 ntBASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
TM9SF3Q9HD45 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 MIR377-201ENST00000362145 69 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-34-201ENST00000362441 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-12-201ENST00000362583 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-29-201ENST00000362834 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-9-201ENST00000362912 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-21-201ENST00000362963 81 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-14-201ENST00000363090 81 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 RNU6-1309P-201ENST00000363305 108 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-13-201ENST00000363358 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-41-201ENST00000363608 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.153-201ENST00000363615 91 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-11-201ENST00000363616 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-5-201ENST00000363633 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-39-201ENST00000363694 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-4-201ENST00000363810 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-16-201ENST00000363887 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-6-201ENST00000363942 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-42-201ENST00000364273 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-15-201ENST00000364809 81 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 RNU5E-4P-201ENST00000364931 120 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-1-201ENST00000364961 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-26-201ENST00000365067 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-10-201ENST00000365073 81 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-43-201ENST00000365503 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-36-201ENST00000365629 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.376-201ENST00000365638 108 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.455-201ENST00000384230 98 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.535-201ENST00000384612 99 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 MT-TT-201ENST00000387460 66 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORA53-201ENST00000391141 249 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 MIR548P-201ENST00000408336 84 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORA27.4-201ENST00000516650 95 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 RNU6-570P-201ENST00000517051 105 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.721-201ENST00000517207 102 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 MIR4680-201ENST00000580906 66 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 AC006006.1-201ENST00000603082 144 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 AC008608.1-201ENST00000603910 127 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 SNORD115-40-201ENST00000606510 82 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.38□□□□□ -2.35
TM9SF3Q9HD45 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 MIR342-201ENST00000362212 99 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 MIR18A-201ENST00000362310 71 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.84-201ENST00000363011 104 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.85-201ENST00000363014 111 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.91-201ENST00000363042 107 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNU6-867P-201ENST00000364956 107 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNU6-326P-201ENST00000365480 107 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNU6-211P-201ENST00000384047 107 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.512-201ENST00000384518 102 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 MIR140-201ENST00000385282 100 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNU6-1228P-201ENST00000391014 107 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNA5SP496-201ENST00000391240 109 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 RNU6-177P-201ENST00000411257 104 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 MTCO2P12-201ENST00000427426 682 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AF228730.3-201ENST00000436691 102 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AC107297.1-201ENST00000459991 176 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AC100767.1-201ENST00000528178 123 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AC020661.2-201ENST00000560114 134 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 MIR3612-201ENST00000579753 87 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AL162730.1-201ENST00000605734 292 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 AC037487.3-201ENST00000606668 112 ntBASIC0.37□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.7-201ENST00000362352 102 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.128-201ENST00000363391 112 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.229-201ENST00000364347 113 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.460-201ENST00000384255 102 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 SNORA27-201ENST00000384323 126 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 Y_RNA.622-201ENST00000411091 108 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 RNU6-602P-201ENST00000411155 105 ntBASIC0.36□□□□□ -2.35
TM9SF3Q9HD45 RNU7-56P-201ENST00000458744 62 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms