Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 Y_RNA.241-201ENST00000364470 117 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 SNORA27-201ENST00000384323 126 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 Y_RNA.537-201ENST00000384626 109 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 Y_RNA.568-201ENST00000384742 113 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 MIR613-201ENST00000385248 95 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 SNORD41-201ENST00000386967 70 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 RNU7-80P-201ENST00000459562 61 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 RNU6-346P-201ENST00000516288 111 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 SCARNA15-202ENST00000516881 127 ntBASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
PTCHD3Q3KNS1 Y_RNA.52-201ENST00000362760 96 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 RNU6-774P-201ENST00000363238 107 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 SNORA24-201ENST00000384096 131 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 SNORA70.7-201ENST00000384159 133 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 MIR520C-201ENST00000385005 87 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 MTATP6P21-201ENST00000440681 189 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 RPL30P7-201ENST00000479312 323 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 MIR4255-201ENST00000579351 72 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 MIR4764-201ENST00000580680 88 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 MIR376A2-201ENST00000636782 80 ntBASIC1.59□□□□□ -2.15
PTCHD3Q3KNS1 SNORD18B-201ENST00000365659 72 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 Y_RNA.454-201ENST00000384224 113 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 SNORD28B-201ENST00000390993 75 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 RNU7-96P-201ENST00000459535 64 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 RPS29P24-201ENST00000486345 171 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 RNA5SP445-201ENST00000515889 115 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 SNORA25.12-201ENST00000516202 82 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-922P-201ENST00000516753 99 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 MIR4303-201ENST00000581299 66 ntBASIC1.58□□□□□ -2.16
PTCHD3Q3KNS1 MTND5P32-201ENST00000560711 1802 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 Y_RNA.494-201ENST00000384432 111 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 AL603914.1-201ENST00000401964 204 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-998P-201ENST00000515894 101 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-1149P-201ENST00000516810 97 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-902P-201ENST00000517212 91 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 AC090821.2-201ENST00000523552 176 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 MIR3664-201ENST00000579074 99 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 MIR3937-201ENST00000580135 106 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.57□□□□□ -2.16
PTCHD3Q3KNS1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RNY1P11-201ENST00000363759 113 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-704P-201ENST00000364162 103 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 Y_RNA.351-201ENST00000365436 96 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RNU4-62P-201ENST00000410125 130 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RPS29P29-201ENST00000456396 171 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RNA5SP236-201ENST00000516169 116 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-426P-201ENST00000516464 97 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 MIR4285-201ENST00000581001 85 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 AP001485.1-201ENST00000604799 199 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 MIR4791-201ENST00000607666 84 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 AC243994.1-201ENST00000618627 109 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 AC008133.2-201ENST00000624540 351 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 AC010332.2-201ENST00000613083 1904 ntBASIC1.56□□□□□ -2.16
PTCHD3Q3KNS1 MIR378A-201ENST00000362177 66 ntBASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 AL035398.1-201ENST00000430869 322 ntBASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 RNU7-53P-201ENST00000516705 60 ntBASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 RNU2-60P-201ENST00000517290 128 ntBASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
PTCHD3Q3KNS1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 Y_RNA.420-201ENST00000384043 110 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-187P-201ENST00000384139 106 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-460P-201ENST00000391158 108 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 BTF3P4-201ENST00000418852 495 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RPL39P39-201ENST00000455840 151 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNU7-73P-201ENST00000458743 63 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 AC108729.3-201ENST00000513484 108 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 SNORD111.1-201ENST00000516421 86 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNU6-113P-201ENST00000516653 101 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNU7-70P-201ENST00000516941 66 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 AC019176.1-201ENST00000518519 225 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 AP001328.1-201ENST00000528550 176 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 AL512310.8-201ENST00000550183 120 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 TUG1_4.1-201ENST00000619464 181 ntBASIC1.54□□□□□ -2.16
PTCHD3Q3KNS1 RNA5SP48-201ENST00000363969 126 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 SNORA51.10-201ENST00000384418 136 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 SNORA40-201ENST00000388090 126 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 SNORA67.5-201ENST00000391036 107 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 RNU7-67P-201ENST00000459003 62 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 snoU13.16-201ENST00000459350 104 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 Y_RNA.692-201ENST00000516627 105 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 AC011603.4-201ENST00000611325 277 ntBASIC1.53□□□□□ -2.16
PTCHD3Q3KNS1 U8.1-201ENST00000362843 134 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 RNU1-133P-201ENST00000364867 167 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 RPS27P16-201ENST00000425758 201 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 AL133373.1-201ENST00000497098 94 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 RNU6-970P-201ENST00000516312 107 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 SNORD53B-201ENST00000577887 78 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 MIR3121-201ENST00000579680 77 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 AL645939.4-201ENST00000604495 135 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 U7.2-201ENST00000607576 63 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 AL121890.5-201ENST00000620848 304 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 AC091932.4-201ENST00000623386 200 ntBASIC1.52□□□□□ -2.17
PTCHD3Q3KNS1 RNU1-42P-201ENST00000364033 160 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 217.5 ms