Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC006461.1-201ENST00000412637 326 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.06□□□□□ -2.24
HOXD4P09016 AC087343.1-201ENST00000477341 475 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 RNU6-165P-201ENST00000517170 99 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.06□□□□□ -2.24
HOXD4P09016 MIR3664-201ENST00000579074 99 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR4431-201ENST00000579990 94 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR378D2-201ENST00000580636 98 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 FTX_2.1-201ENST00000618816 94 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 MIR6515-201ENST00000619843 57 ntBASIC1.06□□□□□ -2.24
HOXD4P09016 SNORD114-27-201ENST00000363766 70 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 SNORD115-28-201ENST00000363931 81 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNU6-978P-201ENST00000364371 103 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 Y_RNA.354-201ENST00000365448 111 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 SNORA1-201ENST00000384107 130 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR222-201ENST00000384992 110 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
HOXD4P09016 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.05□□□□□ -2.24
HOXD4P09016 RPS29P1-201ENST00000465274 159 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 Y_RNA.662-201ENST00000516028 97 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNA5SP480-201ENST00000516840 109 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 RNU6-1223P-201ENST00000517124 104 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR548AR-201ENST00000582191 57 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 AL096861.1-201ENST00000610899 123 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 MIR8065-201ENST00000620577 100 ntBASIC1.05□□□□□ -2.24
HOXD4P09016 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.05□□□□□ -2.24
HOXD4P09016 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
HOXD4P09016 Y_RNA.37-201ENST00000362606 108 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 Y_RNA.150-201ENST00000363562 102 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA25.8-201ENST00000364831 128 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR618-201ENST00000385287 98 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
HOXD4P09016 PCNPP3-201ENST00000393579 471 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU6-938P-201ENST00000411285 103 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.04□□□□□ -2.24
HOXD4P09016 AF228730.3-201ENST00000436691 102 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU7-41P-201ENST00000515917 61 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU6-947P-201ENST00000516264 106 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 SNORD116-25-201ENST00000516517 92 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU7-43P-201ENST00000516554 64 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AC019288.1-201ENST00000557918 224 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR4764-201ENST00000580680 88 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR3192-201ENST00000584920 77 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 AL357312.1-201ENST00000603879 298 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 MIR6788-201ENST00000618842 66 ntBASIC1.04□□□□□ -2.24
HOXD4P09016 RNU4-84P-201ENST00000364200 139 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR570-201ENST00000384917 97 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR520C-201ENST00000385005 87 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC107027.2-201ENST00000512197 115 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 SNORD36C-201ENST00000516733 66 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 RN7SKP88-201ENST00000516847 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR3129-201ENST00000581095 76 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR151B-201ENST00000584249 96 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC098479.1-201ENST00000609225 154 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.8-201ENST00000612110 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.11-201ENST00000615477 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 AC134878.1-201ENST00000619901 243 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 7SK.13-201ENST00000622040 250 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 MIR376A2-201ENST00000636782 80 ntBASIC1.03□□□□□ -2.24
HOXD4P09016 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.241-201ENST00000364470 117 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.270-201ENST00000364693 104 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.370-201ENST00000365589 108 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 Y_RNA.494-201ENST00000384432 111 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 RNU6-768P-201ENST00000384683 107 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 SNORD77.3-201ENST00000391113 65 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.02□□□□□ -2.25
HOXD4P09016 AC087499.4-201ENST00000448505 178 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 snoU13.25-201ENST00000458945 104 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AP003484.1-201ENST00000530974 250 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AL365205.2-201ENST00000594586 68 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 AC008133.2-201ENST00000624540 351 ntBASIC1.02□□□□□ -2.25
HOXD4P09016 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.02□□□□□ -2.25
HOXD4P09016 SNORD114-26-201ENST00000363543 72 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.357-201ENST00000365487 109 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-1336P-201ENST00000383886 109 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.441-201ENST00000384123 112 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-886P-201ENST00000384319 105 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.521-201ENST00000384560 114 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 Y_RNA.542-201ENST00000384641 111 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-239P-201ENST00000390990 99 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
HOXD4P09016 RPS26P48-201ENST00000491713 339 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 SNORA18.4-201ENST00000516440 124 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 RNU6-113P-201ENST00000516653 101 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
HOXD4P09016 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.01□□□□□ -2.25
HOXD4P09016 MIR6767-201ENST00000637302 66 ntBASIC1.01□□□□□ -2.25
HOXD4P09016 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
HOXD4P09016 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-34-201ENST00000362441 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 RNA5SP327-201ENST00000362494 101 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-12-201ENST00000362583 82 ntBASIC1□□□□□ -2.25
HOXD4P09016 SNORD115-29-201ENST00000362834 82 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 358.1 ms