Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 SNORD115-28-201ENST00000363931 81 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 SNORA63C-201ENST00000364578 129 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 RNU6-1138P-201ENST00000365359 106 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
CCDC43Q96MW1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
CCDC43Q96MW1 RNA5SP496-201ENST00000391240 109 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 MIR1302-11-201ENST00000408051 138 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 MIR1302-9-201ENST00000408365 138 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 MIR1302-10-201ENST00000408734 138 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC43Q96MW1 AC087499.4-201ENST00000448505 178 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.637-201ENST00000459424 114 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 SNORA25.12-201ENST00000516202 82 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 RNA5SP480-201ENST00000516840 109 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.3□□□□□ -2.36
CCDC43Q96MW1 MIR1302-2-201ENST00000607096 138 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 AC013791.1-201ENST00000616619 62 ntBASIC0.3□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.197-201ENST00000364004 102 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.466-201ENST00000384294 113 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.486-201ENST00000384398 107 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.569-201ENST00000384749 103 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 MIR193B-201ENST00000384907 83 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 SNORA40.5-201ENST00000391061 128 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 MIR18B-201ENST00000454574 71 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 HSPE1P25-201ENST00000455484 251 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 RNU7-73P-201ENST00000458743 63 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 RNU6-475P-201ENST00000516073 104 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 RNU6-397P-201ENST00000516226 104 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 AC008608.1-201ENST00000603910 127 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 AP000942.4-201ENST00000604811 241 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 MIR376A1-201ENST00000616574 68 ntBASIC0.29□□□□□ -2.36
CCDC43Q96MW1 RNA5SP517-201ENST00000364724 117 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.303-201ENST00000364998 94 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.424-201ENST00000384063 103 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 RNU6-364P-201ENST00000384387 107 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 MIR588-201ENST00000384900 83 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 MIR518F-201ENST00000384973 87 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 Y_RNA.579-201ENST00000390939 94 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 RNU6-938P-201ENST00000411285 103 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 MTCO1P5-201ENST00000433573 344 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 Z97988.1-201ENST00000637697 135 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 AC112487.2-201ENST00000637950 304 ntBASIC0.28□□□□□ -2.36
CCDC43Q96MW1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
CCDC43Q96MW1 SNORD44.1-201ENST00000363202 61 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 Y_RNA.263-201ENST00000364659 114 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 MIR125B2-201ENST00000385128 89 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-1319P-201ENST00000390855 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-747P-201ENST00000390928 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-241P-201ENST00000391148 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 SNORD100-201ENST00000408573 76 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-447P-201ENST00000410293 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-1118P-201ENST00000410382 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-1076P-201ENST00000410397 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-355P-201ENST00000410427 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-791P-201ENST00000410467 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-705P-201ENST00000410601 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-1100P-201ENST00000410691 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-860P-201ENST00000410860 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-1217P-201ENST00000411276 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 RNU6-785P-201ENST00000411324 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 HMGN1P33-201ENST00000432945 451 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 AC090897.1-201ENST00000580909 226 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC43Q96MW1 AC122108.2-201ENST00000611946 526 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 U6.90-201ENST00000614007 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 U6.70-201ENST00000620287 104 ntBASIC0.27□□□□□ -2.37
CCDC43Q96MW1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.26□□□□□ -2.37
CCDC43Q96MW1 MIR367-201ENST00000362299 68 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 Y_RNA.37-201ENST00000362606 108 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU6-1309P-201ENST00000363305 108 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 Y_RNA.445-201ENST00000384168 102 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 SNORA27-201ENST00000384323 126 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 MIR518A1-201ENST00000385068 85 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU6-1009P-201ENST00000390996 107 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU6-1165P-201ENST00000410119 107 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU7-102P-201ENST00000458948 62 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU6-693P-201ENST00000516134 107 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 SNORA62.5-201ENST00000516634 120 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU7-53P-201ENST00000516705 60 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
CCDC43Q96MW1 MIR5692C2-201ENST00000577959 77 ntBASIC0.26□□□□□ -2.37
CCDC43Q96MW1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
CCDC43Q96MW1 RNU4-90P-201ENST00000362773 141 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 Y_RNA.293-201ENST00000364908 93 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 SNORD115-46-201ENST00000390982 71 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 SNORA40.8-201ENST00000411034 126 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 RNU7-185P-201ENST00000459215 60 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 RNU6-507P-201ENST00000516045 100 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 SNORD77.4-201ENST00000516158 81 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 RNU7-156P-201ENST00000517214 74 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 AC022523.2-201ENST00000561045 150 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 MIR4724-201ENST00000579485 89 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 AC124312.5-201ENST00000604451 268 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.25□□□□□ -2.37
CCDC43Q96MW1 Y_RNA.183-201ENST00000363882 113 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 196.2 ms