Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORD28B-201ENST00000390993 75 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1228P-201ENST00000391014 107 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 COX6CP14-201ENST00000469580 174 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 SNORA31.2-201ENST00000516019 134 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 MIR3192-201ENST00000584920 77 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 AL357312.1-201ENST00000603879 298 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 AL021707.8-201ENST00000609428 183 ntBASIC1.14□□□□□ -2.23
PDLIM3Q53GG5 MIR193B-201ENST00000384907 83 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 MIR548O-201ENST00000408583 114 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 RNU7-41P-201ENST00000515917 61 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 SNORA74.3-201ENST00000517108 154 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1270P-201ENST00000517128 108 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 MIR4764-201ENST00000580680 88 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 MIR548AR-201ENST00000582191 57 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.13□□□□□ -2.23
PDLIM3Q53GG5 RNU6-653P-201ENST00000363074 106 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU4-17P-201ENST00000365598 141 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 U8.17-201ENST00000391292 132 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU2-70P-201ENST00000410718 179 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 SNRPGP14-201ENST00000435400 219 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU6-693P-201ENST00000516134 107 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 SNORD77.4-201ENST00000516158 81 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU6-561P-201ENST00000516222 102 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU7-40P-201ENST00000516397 64 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 MIR1273G-201ENST00000577677 100 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 RNU2-4P-201ENST00000606190 192 ntBASIC1.12□□□□□ -2.23
PDLIM3Q53GG5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.20-201ENST00000362479 113 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.91-201ENST00000363042 107 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.115-201ENST00000363272 98 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 RNU6-910P-201ENST00000390844 107 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.626-201ENST00000411288 95 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1299P-201ENST00000516316 100 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1271P-201ENST00000517049 105 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 AC004817.2-201ENST00000561794 651 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 AC011921.3-201ENST00000605540 361 ntBASIC1.11□□□□□ -2.23
PDLIM3Q53GG5 RNY4P28-201ENST00000365281 93 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.547-201ENST00000384654 119 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 MIR15B-201ENST00000385045 98 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 SNRPGP8-201ENST00000454064 226 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 AL133373.1-201ENST00000497098 94 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1023P-201ENST00000516137 106 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 RNU6-365P-201ENST00000517113 106 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 AC068338.1-201ENST00000565567 176 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 AC006441.5-201ENST00000612680 209 ntBASIC1.1□□□□□ -2.23
PDLIM3Q53GG5 SNORD45.3-201ENST00000363836 72 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.188-201ENST00000363952 111 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 RNU6-1138P-201ENST00000365359 106 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.432-201ENST00000384087 111 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 SNORD61-201ENST00000384252 73 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 Y_RNA.478-201ENST00000384358 107 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 MIR616-201ENST00000385293 97 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 RNU6-381P-201ENST00000391259 108 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.09□□□□□ -2.23
PDLIM3Q53GG5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 RNA5SP62-201ENST00000363457 110 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.241-201ENST00000364470 117 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.242-201ENST00000364473 110 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.330-201ENST00000365230 109 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.370-201ENST00000365589 108 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 AL121914.1-201ENST00000450188 156 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 snoU13.25-201ENST00000458945 104 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 SNORA70.22-201ENST00000517160 124 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 MIR5000-201ENST00000577717 103 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 MIR4662B-201ENST00000579498 81 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 MIR5688-201ENST00000580619 83 ntBASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.489-201ENST00000384410 101 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 AC245047.7-201ENST00000440265 293 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.797-201ENST00000515977 94 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 RNU4-57P-201ENST00000515980 135 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 RN7SKP179-201ENST00000516126 217 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 RNU4-71P-201ENST00000516258 113 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 RNU7-43P-201ENST00000516554 64 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 MIR4308-201ENST00000580634 81 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 AL590095.2-201ENST00000604136 117 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 AL022345.2-201ENST00000606307 135 ntBASIC1.07□□□□□ -2.24
PDLIM3Q53GG5 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.85-201ENST00000363014 111 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.182-201ENST00000363880 111 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 SNORD115-28-201ENST00000363931 81 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.634-201ENST00000364811 113 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.363-201ENST00000365529 113 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.401-201ENST00000383965 117 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 Y_RNA.494-201ENST00000384432 111 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RNU4-70P-201ENST00000384579 139 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 SNORA79-201ENST00000408376 140 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RPS29P29-201ENST00000456396 171 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 SNORA31.4-201ENST00000516049 129 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RNU6-504P-201ENST00000516568 104 ntBASIC1.06□□□□□ -2.24
PDLIM3Q53GG5 RNU6-388P-201ENST00000517012 105 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms