Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.14-201ENST00000362415 103 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 RNU4-90P-201ENST00000362773 141 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.183-201ENST00000363882 113 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 SNORA18.4-201ENST00000516440 124 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.715-201ENST00000517082 110 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 MIR4795-201ENST00000584182 89 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 AP000942.4-201ENST00000604811 241 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.36□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-28-201ENST00000363931 81 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 SNORA63C-201ENST00000364578 129 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 SNORA63.7-201ENST00000365579 123 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 RNU6-342P-201ENST00000384521 104 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 RNU6-913P-201ENST00000390913 95 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 RNU6-938P-201ENST00000411285 103 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 MTND4P19-201ENST00000446659 478 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 AC087499.4-201ENST00000448505 178 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 RNU7-73P-201ENST00000458743 63 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.639-201ENST00000458981 102 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 MTND3P22-201ENST00000510932 243 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 AC124312.5-201ENST00000604451 268 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 MIR6740-201ENST00000618268 113 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 AC090574.1-201ENST00000623186 233 ntBASIC0.35□□□□□ -2.35
CCDC40Q4G0X9 MIR367-201ENST00000362299 68 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 RNU4-73P-201ENST00000363164 141 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.486-201ENST00000384398 107 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 SNORD38B-201ENST00000384690 67 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 MIR216A-201ENST00000385063 110 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 MIR938-201ENST00000401216 83 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 SNORD77.4-201ENST00000516158 81 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.702-201ENST00000516843 96 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 RNU6-897P-201ENST00000517135 105 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 MIR5692C2-201ENST00000577959 77 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 MIR4724-201ENST00000579485 89 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 RAC1P9-201ENST00000604990 392 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 AL133255.1-201ENST00000606374 441 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 MIR8055-201ENST00000610739 97 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 SNORD38B-202ENST00000625943 69 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 Z97988.1-201ENST00000637697 135 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 AC010332.2-201ENST00000613083 1904 ntBASIC0.34□□□□□ -2.36
CCDC40Q4G0X9 RNU6-1272P-201ENST00000362776 107 ntBASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.395-201ENST00000383945 109 ntBASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 SNORA40.5-201ENST00000391061 128 ntBASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.645-201ENST00000391229 102 ntBASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 AC092634.7-201ENST00000621022 103 ntBASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC40Q4G0X9 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 MIR518F-201ENST00000384973 87 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.587-201ENST00000391210 103 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 MIR18B-201ENST00000454574 71 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 AC002350.1-201ENST00000490759 375 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 MIR4662B-201ENST00000579498 81 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 MIR548S-201ENST00000581352 82 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 MIR7111-201ENST00000619751 72 ntBASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.32□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.37-201ENST00000362606 108 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 SNORD114-23-201ENST00000363536 72 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 SNORA27-201ENST00000384323 126 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 MIR588-201ENST00000384900 83 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.581-201ENST00000391017 97 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 RNU6-693P-201ENST00000516134 107 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 RNU7-53P-201ENST00000516705 60 ntBASIC0.31□□□□□ -2.36
CCDC40Q4G0X9 MIR369-201ENST00000362155 70 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.105-201ENST00000363182 111 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RNU6-450P-201ENST00000364654 107 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.293-201ENST00000364908 93 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 MIR548A2-201ENST00000384956 97 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RNU6-679P-201ENST00000391003 106 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RNU6-823P-201ENST00000391042 103 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 SNORD100-201ENST00000408573 76 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RNU6-1165P-201ENST00000410119 107 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 HMGN1P33-201ENST00000432945 451 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RPS29P24-201ENST00000486345 171 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 MTCO2P24-201ENST00000515611 426 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 AC008608.1-201ENST00000603910 127 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 AC090971.5-201ENST00000621102 293 ntBASIC0.3□□□□□ -2.36
CCDC40Q4G0X9 RNU6-290P-201ENST00000365212 101 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 RNY1P4-201ENST00000384595 115 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 MIR125B2-201ENST00000385128 89 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 RNU6-121P-201ENST00000410525 99 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 PMCHL1-202ENST00000423102 261 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 SNORD36C-201ENST00000516733 66 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 AC090897.1-201ENST00000580909 226 ntBASIC0.29□□□□□ -2.36
CCDC40Q4G0X9 AL589743.1-201ENST00000551932 2712 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 Y_RNA.31-201ENST00000362574 102 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 RNA5SP517-201ENST00000364724 117 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 SNORD24-201ENST00000383884 75 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 SNORD61-201ENST00000384252 73 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 RNU6-364P-201ENST00000384387 107 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 MIR1252-201ENST00000408861 65 ntBASIC0.28□□□□□ -2.36
CCDC40Q4G0X9 RNU6-602P-201ENST00000411155 105 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 203 ms