Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNA5SP436-201ENST00000516020 115 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 RN7SKP179-201ENST00000516126 217 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 RNU4-71P-201ENST00000516258 113 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 RNU7-25P-201ENST00000516544 62 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 AC006441.5-201ENST00000612680 209 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 MIR8065-201ENST00000620577 100 ntBASIC1.29□□□□□ -2.2
HOXC9P31274 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
HOXC9P31274 RNU7-181P-201ENST00000517234 74 ntBASIC1.28□□□□□ -2.2
HOXC9P31274 AL160236.1-201ENST00000556317 195 ntBASIC1.28□□□□□ -2.2
HOXC9P31274 MIR4662B-201ENST00000579498 81 ntBASIC1.28□□□□□ -2.2
HOXC9P31274 AL096861.1-201ENST00000610899 123 ntBASIC1.28□□□□□ -2.2
HOXC9P31274 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXC9P31274 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXC9P31274 SNORD28B-201ENST00000390993 75 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 RNU2-70P-201ENST00000410718 179 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 RNU6-1299P-201ENST00000516316 100 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 RNU6-1270P-201ENST00000517128 108 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 MIR5000-201ENST00000577717 103 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 MIR4764-201ENST00000580680 88 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.27□□□□□ -2.21
HOXC9P31274 MIR3192-201ENST00000584920 77 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 RNU2-4P-201ENST00000606190 192 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 AL391903.3-201ENST00000612158 163 ntBASIC1.27□□□□□ -2.21
HOXC9P31274 Y_RNA.432-201ENST00000384087 111 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 MIR570-201ENST00000384917 97 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 U8.17-201ENST00000391292 132 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 SNORD58.1-201ENST00000391313 66 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXC9P31274 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.26□□□□□ -2.21
HOXC9P31274 AC048334.1-201ENST00000477975 159 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 RNU7-41P-201ENST00000515917 61 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 SNORA31.2-201ENST00000516019 134 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 RNU6-365P-201ENST00000517113 106 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 MIR6857-201ENST00000613267 93 ntBASIC1.26□□□□□ -2.21
HOXC9P31274 RNA5SP327-201ENST00000362494 101 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 Y_RNA.91-201ENST00000363042 107 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 SNORD45.3-201ENST00000363836 72 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 Y_RNA.547-201ENST00000384654 119 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 RNU6-1228P-201ENST00000391014 107 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.25□□□□□ -2.21
HOXC9P31274 SNRPGP8-201ENST00000454064 226 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 RNU6-693P-201ENST00000516134 107 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 RNU6-561P-201ENST00000516222 102 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 RNU7-43P-201ENST00000516554 64 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 RNA5SP480-201ENST00000516840 109 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 CYP3A137P-201ENST00000562436 69 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 MIR4308-201ENST00000580634 81 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 MIR548AR-201ENST00000582191 57 ntBASIC1.25□□□□□ -2.21
HOXC9P31274 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.25□□□□□ -2.21
HOXC9P31274 Y_RNA.200-201ENST00000364018 102 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 RNU6-484P-201ENST00000384016 107 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 RNY3P5-201ENST00000384127 102 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 RNU6-388P-201ENST00000517012 105 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 RNU6-389P-201ENST00000517048 105 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 MIR4698-201ENST00000577795 80 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
HOXC9P31274 AC078938.1-201ENST00000620993 318 ntBASIC1.24□□□□□ -2.21
HOXC9P31274 Y_RNA.7-201ENST00000362352 102 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RNU6-103P-201ENST00000363686 107 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RNU6-379P-201ENST00000363813 104 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 SNORA25.8-201ENST00000364831 128 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RNU6-728P-201ENST00000365375 104 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 SNORD61-201ENST00000384252 73 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 MIR150-201ENST00000385048 84 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 SNORA26-201ENST00000391286 122 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RPS29P28-201ENST00000446439 141 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 AL121914.1-201ENST00000450188 156 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXC9P31274 Y_RNA.797-201ENST00000515977 94 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RNU4-57P-201ENST00000515980 135 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 RNU6-830P-201ENST00000516353 107 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC9P31274 AC019288.1-201ENST00000557918 224 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 MIR4744-201ENST00000581563 82 ntBASIC1.23□□□□□ -2.21
HOXC9P31274 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.23□□□□□ -2.21
HOXC9P31274 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC9P31274 MIR411-201ENST00000362239 96 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 Y_RNA.83-201ENST00000363005 113 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 SNORA25.3-201ENST00000363205 127 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 Y_RNA.182-201ENST00000363880 111 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 Y_RNA.634-201ENST00000364811 113 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 Y_RNA.370-201ENST00000365589 108 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 Y_RNA.476-201ENST00000384347 108 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 MIR7-2-201ENST00000384970 110 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 RNU2-55P-201ENST00000411146 174 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.22□□□□□ -2.21
HOXC9P31274 RNU6-126P-201ENST00000516685 103 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 AC007751.1-201ENST00000529260 376 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
HOXC9P31274 AC130289.1-201ENST00000577321 73 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 AC008133.2-201ENST00000624540 351 ntBASIC1.22□□□□□ -2.21
HOXC9P31274 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXC9P31274 SNORD115-28-201ENST00000363931 81 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 RNU4-70P-201ENST00000384579 139 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 RNU6-939P-201ENST00000384634 107 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 Y_RNA.571-201ENST00000384753 98 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 MIR598-201ENST00000384868 97 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 MIR518F-201ENST00000384973 87 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 MIR613-201ENST00000385248 95 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 253.4 ms