Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SNORD15B-201ENST00000384714 146 ntBASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 MIR561-201ENST00000385216 97 ntBASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 RNU6-667P-201ENST00000517186 102 ntBASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 MIR4672-201ENST00000583126 81 ntBASIC4.32□□□□□ -1.72
CCDC61Q9Y6R9 AC091152.2-201ENST00000591628 2569 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 SNORA71.1-201ENST00000364523 117 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 RNU6-540P-201ENST00000384622 101 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 MIR592-201ENST00000384959 97 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 MIR516B2-201ENST00000385190 85 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 AP001486.2-201ENST00000561652 5113 ntBASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC61Q9Y6R9 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 Y_RNA.532-201ENST00000384590 113 ntBASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 MIR635-201ENST00000384830 98 ntBASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 MIR452-201ENST00000385020 85 ntBASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 MIR136-201ENST00000385207 82 ntBASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
CCDC61Q9Y6R9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 AC007336.1-201ENST00000576365 3828 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 Y_RNA.264-201ENST00000364665 102 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 MIR3074-201ENST00000384885 81 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 Y_RNA.596-201ENST00000410462 109 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 HMGN1P33-201ENST00000432945 451 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 AL355297.2-201ENST00000604792 129 ntBASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC61Q9Y6R9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 SNORA5B-201ENST00000363786 132 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 SNORD6-201ENST00000365444 73 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 RNU6-1067P-201ENST00000384752 107 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 RNU6-1328P-201ENST00000410938 106 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 AL139132.1-201ENST00000431587 344 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 AL365361.1-201ENST00000566942 3481 ntBASIC4.28□□□□□ -1.72
CCDC61Q9Y6R9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 HSBP1P2-201ENST00000299671 229 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-499P-201ENST00000365615 107 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 SNORD77.2-201ENST00000391045 68 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 SNORA11.4-201ENST00000408823 129 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 NDUFB9P3-201ENST00000521269 501 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 RPL12P50-201ENST00000603116 116 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 AC006023.1-201ENST00000603944 259 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 AP000753.3-201ENST00000604083 169 ntBASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC61Q9Y6R9 MIR30E-201ENST00000362104 92 ntBASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-663P-201ENST00000391105 106 ntBASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 AC006539.3-201ENST00000454258 129 ntBASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 RNU7-12P-201ENST00000516030 62 ntBASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC61Q9Y6R9 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 MIR22-201ENST00000362190 85 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-811P-201ENST00000384069 107 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 MIR154-201ENST00000385243 84 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 U8.16-201ENST00000391279 133 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 EEF1A1P41-201ENST00000414667 207 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 RNU7-85P-201ENST00000458851 63 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 snoU13.16-201ENST00000459350 104 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 RPS29P11-201ENST00000496507 171 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 MIR664A-201ENST00000626086 82 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 MIR7515-201ENST00000637837 67 ntBASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CCDC61Q9Y6R9 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 SNORD67-201ENST00000390833 111 ntBASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 AL034345.1-201ENST00000407768 123 ntBASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 MIR4474-201ENST00000579189 78 ntBASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 AC110079.1-202ENST00000635213 138 ntBASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC61Q9Y6R9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-1072P-201ENST00000384703 107 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-443P-201ENST00000384780 107 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 Y_RNA.648-201ENST00000459455 110 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 RNU6-303P-201ENST00000517091 106 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 MIR548AR-201ENST00000582191 57 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 MIR8065-201ENST00000620577 100 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC4.23□□□□□ -1.73
CCDC61Q9Y6R9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 254.7 ms