Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MIR101-2-201ENST00000362195 79 ntBASIC-1□□□□□ -2.57
HMGB3O15347 RNU6-1059P-201ENST00000363752 98 ntBASIC-1□□□□□ -2.57
HMGB3O15347 Y_RNA.481-201ENST00000384373 102 ntBASIC-1□□□□□ -2.57
HMGB3O15347 MIR548O-201ENST00000408583 114 ntBASIC-1□□□□□ -2.57
HMGB3O15347 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-1□□□□□ -2.57
HMGB3O15347 RNU6-710P-201ENST00000410424 105 ntBASIC-1□□□□□ -2.57
HMGB3O15347 RPL39P25-201ENST00000449384 154 ntBASIC-1□□□□□ -2.57
HMGB3O15347 AL662814.1-201ENST00000617364 121 ntBASIC-1□□□□□ -2.57
HMGB3O15347 RNA5SP205-201ENST00000364653 136 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 Y_RNA.530-201ENST00000384587 101 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 RNU4-55P-201ENST00000410731 137 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 AC096949.1-201ENST00000412047 152 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.01□□□□□ -2.57
HMGB3O15347 Z95118.1-201ENST00000421372 247 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 RPL30P15-201ENST00000457129 321 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 SNORD11-201ENST00000459124 84 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 RNU7-115P-201ENST00000516433 55 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.01□□□□□ -2.57
HMGB3O15347 AC018462.2-201ENST00000605375 395 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 AC027449.1-201ENST00000608890 407 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.01□□□□□ -2.57
HMGB3O15347 MIR6507-201ENST00000613630 70 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 AC068137.3-201ENST00000639191 341 ntBASIC-1.01□□□□□ -2.57
HMGB3O15347 Y_RNA.146-201ENST00000363549 102 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 Y_RNA.296-201ENST00000364930 108 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 Y_RNA.446-201ENST00000384178 104 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 MTATP6P26-201ENST00000445926 662 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 AC005014.2-201ENST00000607795 599 ntBASIC-1.02□□□□□ -2.57
HMGB3O15347 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 RNU4-50P-201ENST00000364361 141 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 Y_RNA.251-201ENST00000364551 99 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 Y_RNA.341-201ENST00000365341 102 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 SNORA1-201ENST00000384107 130 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 Y_RNA.456-201ENST00000384232 111 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 RNY1P7-201ENST00000384743 110 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 Y_RNA.615-201ENST00000410769 117 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 RPS29P24-201ENST00000486345 171 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 SCARNA1-201ENST00000517138 166 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 AP001328.1-201ENST00000528550 176 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 MIR3681-201ENST00000580089 72 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 MIR4436A-201ENST00000585278 85 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 AC073648.5-201ENST00000603502 305 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 AC084368.1-201ENST00000620935 65 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 AC073869.9-201ENST00000641610 120 ntBASIC-1.03□□□□□ -2.57
HMGB3O15347 RNA5SP245-201ENST00000364239 121 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 RNA5SP368-201ENST00000364298 116 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 SNORA27-201ENST00000384323 126 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 MIR1278-201ENST00000408753 81 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 RNU6-1068P-201ENST00000410958 103 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 RNU6-938P-201ENST00000411285 103 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 SNORD5.1-201ENST00000458800 75 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 RNU6-155P-201ENST00000516347 100 ntBASIC-1.04□□□□□ -2.58
HMGB3O15347 SNORD95.1-201ENST00000364099 68 ntBASIC-1.05□□□□□ -2.58
HMGB3O15347 AC108059.2-201ENST00000434626 151 ntBASIC-1.05□□□□□ -2.58
HMGB3O15347 MTND3P7-201ENST00000474435 343 ntBASIC-1.05□□□□□ -2.58
HMGB3O15347 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-1.05□□□□□ -2.58
HMGB3O15347 MIR2355-201ENST00000517199 87 ntBASIC-1.05□□□□□ -2.58
HMGB3O15347 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-1.05□□□□□ -2.58
HMGB3O15347 SNORD114-14-201ENST00000362723 75 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 SNORD115-28-201ENST00000363931 81 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 SNORA72.6-201ENST00000384520 129 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.06□□□□□ -2.58
HMGB3O15347 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.06□□□□□ -2.58
HMGB3O15347 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-1.06□□□□□ -2.58
HMGB3O15347 RNU6-138P-201ENST00000515952 107 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 AL360085.1-201ENST00000604713 532 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 MIR548AY-201ENST00000617669 107 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 Z69908.1-201ENST00000622603 247 ntBASIC-1.06□□□□□ -2.58
HMGB3O15347 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 Y_RNA.409-201ENST00000383990 98 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 RNU6-926P-201ENST00000384075 107 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 MIRLET7F2-201ENST00000385277 83 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 SNORD77.3-201ENST00000391113 65 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 MIR548L-201ENST00000408303 86 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 MIR548I3-201ENST00000408378 149 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 RNA5SP237-201ENST00000410414 113 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 AF228730.4-201ENST00000421457 183 ntBASIC-1.07□□□□□ -2.58
HMGB3O15347 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-1.07□□□□□ -2.58
HMGB3O15347 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-1.07□□□□□ -2.58
HMGB3O15347 Y_RNA.414-201ENST00000384011 101 ntBASIC-1.08□□□□□ -2.58
HMGB3O15347 IGKV1-22-201ENST00000524313 326 ntBASIC-1.08□□□□□ -2.58
HMGB3O15347 SNORA3B-201ENST00000391305 131 ntBASIC-1.09□□□□□ -2.58
HMGB3O15347 AL445567.1-201ENST00000439121 144 ntBASIC-1.09□□□□□ -2.58
HMGB3O15347 MTND2P22-201ENST00000444325 1033 ntBASIC-1.09□□□□□ -2.58
HMGB3O15347 AC010424.1-201ENST00000506336 297 ntBASIC-1.09□□□□□ -2.58
HMGB3O15347 AC087752.4-201ENST00000605911 462 ntBASIC-1.09□□□□□ -2.58
HMGB3O15347 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-1.09□□□□□ -2.58
HMGB3O15347 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 MIR196A1-201ENST00000388006 70 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.1□□□□□ -2.59
HMGB3O15347 SNORA26.6-201ENST00000391256 115 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 AL590004.1-201ENST00000405321 300 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 SNORA25.16-201ENST00000516741 121 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 AL080274.1-201ENST00000605565 220 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 AC245008.1-201ENST00000608123 476 ntBASIC-1.1□□□□□ -2.59
HMGB3O15347 AC024933.1-201ENST00000608472 348 ntBASIC-1.1□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 272 ms