Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORA14A-201ENST00000364773 135 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.313-201ENST00000365095 103 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.426-201ENST00000384068 113 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR9-1-201ENST00000385198 89 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNA5SP252-201ENST00000391131 119 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD88.1-201ENST00000408684 91 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC060773.1-201ENST00000421698 310 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AL049830.1-201ENST00000468034 425 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AP003484.1-201ENST00000530974 250 ntBASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.43□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-13-201ENST00000363358 82 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD114-26-201ENST00000363543 72 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-16-201ENST00000363887 82 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU4-67P-201ENST00000364569 141 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-1-201ENST00000364961 82 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-546P-201ENST00000383991 107 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AL627390.1-201ENST00000396055 340 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RN7SKP123-201ENST00000410732 291 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 BTF3P4-201ENST00000418852 495 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RPS23P4-201ENST00000487908 423 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC093259.1-201ENST00000509755 300 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.705-201ENST00000516862 110 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC078899.2-201ENST00000595282 212 ntBASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.42□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-1084P-201ENST00000362498 107 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU1-72P-201ENST00000362976 153 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-268P-201ENST00000364174 107 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 snoU2-30.1-201ENST00000365012 70 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-35-201ENST00000365122 82 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.332-201ENST00000365271 113 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU1-51P-201ENST00000365345 176 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORA64-201ENST00000384674 134 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AL035398.1-201ENST00000430869 322 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR4474-201ENST00000579189 78 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.41□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU4-16P-201ENST00000364737 141 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.299-201ENST00000364973 94 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL022718.1-201ENST00000412004 84 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU7-94P-201ENST00000459576 63 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNA5SP282-201ENST00000516355 108 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR4777-201ENST00000583710 86 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR1255B1-201ENST00000636325 63 ntBASIC3.4□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MAPK10-362ENST00000641864 4484 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU1-17P-201ENST00000363022 152 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORD68-201ENST00000363214 84 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.190-201ENST00000363964 101 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-219P-201ENST00000364728 107 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RN7SKP200-201ENST00000410564 320 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-887P-201ENST00000410660 100 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNRPGP14-201ENST00000435400 219 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC139453.2-201ENST00000487255 133 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNA5SP320-201ENST00000516263 124 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU1-142P-201ENST00000516682 145 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR4762-201ENST00000585261 75 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.39□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SNORA1B-201ENST00000362535 133 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-776P-201ENST00000364403 104 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 U8.5-201ENST00000364528 136 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-1022P-201ENST00000365049 104 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.336-201ENST00000365307 109 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.377-201ENST00000365644 108 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR605-201ENST00000385078 83 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-788P-201ENST00000390967 104 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNA5SP144-201ENST00000410846 116 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL356320.1-201ENST00000429616 163 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-267P-201ENST00000516714 103 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR4506-201ENST00000584693 77 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 MIR548Z-201ENST00000584743 97 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.773-201ENST00000607168 90 ntBASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.95-201ENST00000363079 95 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNU6-743P-201ENST00000364151 106 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 RNA5SP467-201ENST00000391274 118 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AL161788.1-201ENST00000441805 169 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC004812.1-201ENST00000540773 146 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 HSPE1P19-201ENST00000603327 295 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 Y_RNA.620-201ENST00000411009 88 ntBASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 AC108667.1-201ENST00000428618 249 ntBASIC3.36□□□□□ -1.87
SENP3-EIF4A1A0A087X0R7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 187.2 ms