Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SNORD11-201ENST00000459124 84 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 NDUFA4P2-201ENST00000489989 244 ntBASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.4□□□□□ -2.19
LIMA1Q9UHB6 RNU6-1209P-201ENST00000363655 107 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.257-201ENST00000364596 102 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 MIR626-201ENST00000385032 94 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 HMGN2P32-201ENST00000444648 269 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 COX6CP14-201ENST00000469580 174 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 SCARNA8-201ENST00000515924 131 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 AC090821.2-201ENST00000523552 176 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 MIR4308-201ENST00000580634 81 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 MIR3660-201ENST00000584845 100 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 FAM106DP-201ENST00000586416 501 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 AC090425.1-201ENST00000610007 140 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 MIR8065-201ENST00000620577 100 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 ZNF209P-201ENST00000593450 2304 ntBASIC1.39□□□□□ -2.19
LIMA1Q9UHB6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 MIR411-201ENST00000362239 96 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.24-201ENST00000362508 103 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.200-201ENST00000364018 102 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 SNORD50B-201ENST00000364995 70 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.336-201ENST00000365307 109 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 RNU6-1318P-201ENST00000365389 103 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.552-201ENST00000384665 112 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 RNU6-381P-201ENST00000391259 108 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 RNU6-138P-201ENST00000515952 107 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 RNU1-92P-201ENST00000517017 135 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 MIR2681-201ENST00000581814 105 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 AL357312.1-201ENST00000603879 298 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.802-201ENST00000614892 130 ntBASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.38□□□□□ -2.19
LIMA1Q9UHB6 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.199-201ENST00000364014 102 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.229-201ENST00000364347 113 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.262-201ENST00000364641 102 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 RNU6-923P-201ENST00000364753 107 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.308-201ENST00000365043 101 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 SNORA8.3-201ENST00000384679 139 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 SNORA40.6-201ENST00000391153 128 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 RNU6-493P-201ENST00000391321 108 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 RNU6-453P-201ENST00000516819 85 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 RPL23AP91-201ENST00000569211 455 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 MIR4724-201ENST00000579485 89 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 AC087685.1-201ENST00000587507 141 ntBASIC1.37□□□□□ -2.19
LIMA1Q9UHB6 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 MIR367-201ENST00000362299 68 ntBASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 RNU6-200P-201ENST00000364743 107 ntBASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 RNU4-17P-201ENST00000365598 141 ntBASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 RNU6-47P-201ENST00000383866 107 ntBASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.36□□□□□ -2.19
LIMA1Q9UHB6 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNA5SP327-201ENST00000362494 101 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.83-201ENST00000363005 113 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 SNORD14E-201ENST00000364009 85 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNA5SP99-201ENST00000364020 114 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 MIR516B2-201ENST00000385190 85 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 MT-TT-201ENST00000387460 66 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNU6-918P-201ENST00000391219 106 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 AC245047.8-201ENST00000456455 284 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNU6-947P-201ENST00000516264 106 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 SNORD111.1-201ENST00000516421 86 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 RNU6-794P-201ENST00000517261 64 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 MIR5688-201ENST00000580619 83 ntBASIC1.35□□□□□ -2.19
LIMA1Q9UHB6 AL442644.1-201ENST00000454390 3105 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.297-201ENST00000364950 91 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 Y_RNA.515-201ENST00000384535 112 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 MIR136-201ENST00000385207 82 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 SNORA17.3-201ENST00000391159 129 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 RNU6-847P-201ENST00000411115 108 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 AC108059.2-201ENST00000434626 151 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 RPL39P39-201ENST00000455840 151 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 AC090142.3-201ENST00000519012 385 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 AL512598.1-201ENST00000610158 273 ntBASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.34□□□□□ -2.19
LIMA1Q9UHB6 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
LIMA1Q9UHB6 MIR26B-201ENST00000362251 77 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 MIR15B-201ENST00000385045 98 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 SNORD72-201ENST00000390994 80 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 RNU6-482P-201ENST00000391068 107 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 RNA5SP496-201ENST00000391240 109 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 AC022559.1-201ENST00000520905 205 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 DNAJC19P9-201ENST00000555084 351 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 AC008507.4-201ENST00000585464 127 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 AL049861.1-201ENST00000603130 150 ntBASIC1.33□□□□□ -2.2
LIMA1Q9UHB6 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 MIR616-201ENST00000385293 97 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 MIR802-201ENST00000390235 94 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 SNRPGP14-201ENST00000435400 219 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 SNORA31.2-201ENST00000516019 134 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 RN7SKP179-201ENST00000516126 217 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 233.2 ms