Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
CCDC39Q9UFE4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 RNU6-170P-201ENST00000362832 104 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.440-201ENST00000384120 114 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 AC060773.1-201ENST00000421698 310 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 CKS1BP2-201ENST00000497342 240 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 RNU6-341P-201ENST00000516973 96 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 AC091544.4-201ENST00000555268 342 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 MIR3683-201ENST00000580847 82 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 MIR5194-201ENST00000582634 120 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 AC006386.2-201ENST00000624491 75 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 AC012005.1-201ENST00000624575 75 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 MIR6079-201ENST00000635807 62 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 AC080100.1-201ENST00000624239 5356 ntBASIC2.9□□□□□ -1.95
CCDC39Q9UFE4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.507-201ENST00000384500 99 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 MIR802-201ENST00000390235 94 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 RNU11-5P-201ENST00000391216 129 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 AC099677.2-201ENST00000436385 175 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 MIR4694-201ENST00000578534 80 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 MIR548Z-201ENST00000584743 97 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 HSPE1P19-201ENST00000603327 295 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 MIR7106-201ENST00000612419 65 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 AC087741.2-201ENST00000619415 172 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 MIR5739-201ENST00000619803 80 ntBASIC2.89□□□□□ -1.95
CCDC39Q9UFE4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 RNU6-979P-201ENST00000383896 107 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.547-201ENST00000384654 119 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 MIR577-201ENST00000385196 96 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 RNU6-938P-201ENST00000411285 103 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 RNU6-857P-201ENST00000515893 110 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 AL358944.1-201ENST00000528537 144 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 MIR5588-201ENST00000581890 63 ntBASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
CCDC39Q9UFE4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 RNU6-832P-201ENST00000363319 107 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 SNORA38-201ENST00000363946 132 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.313-201ENST00000365095 103 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.351-201ENST00000365436 96 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 RNU6-402P-201ENST00000410678 103 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 Z92545.1-201ENST00000411782 234 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 AC123900.1-201ENST00000420390 96 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 SUMO1P4-201ENST00000429430 302 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 AL445646.1-201ENST00000431784 216 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 RNU7-26P-201ENST00000458980 63 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 MIR3618-201ENST00000580330 88 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 AC002984.1-201ENST00000591692 448 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 AC091932.4-201ENST00000623386 200 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 MIR1255B1-201ENST00000636325 63 ntBASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC39Q9UFE4 MIR340-201ENST00000362125 95 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 snoU2-30.2-201ENST00000362805 70 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.155-201ENST00000363632 101 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 SNORA80A-201ENST00000363922 136 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 RNU6-743P-201ENST00000364151 106 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 RNU6-268P-201ENST00000364174 107 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.332-201ENST00000365271 113 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.360-201ENST00000365512 102 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 RNU6-442P-201ENST00000383968 104 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 RNA5SP467-201ENST00000391274 118 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 RNU2-63P-201ENST00000410792 194 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 BTF3P4-201ENST00000418852 495 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 SNRPGP14-201ENST00000435400 219 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 AC093259.1-201ENST00000509755 300 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 EIF4BP1-201ENST00000554881 351 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 MIR4666B-201ENST00000578142 81 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 AL033523.1-201ENST00000605153 153 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.773-201ENST00000607168 90 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 AC005336.3-201ENST00000623833 2679 ntBASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC39Q9UFE4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU6-661P-201ENST00000362409 107 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU6-363P-201ENST00000362895 105 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORD115-19-201ENST00000363098 82 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORD115-18-201ENST00000363293 82 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 Y_RNA.190-201ENST00000363964 101 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORD115-17-201ENST00000364612 82 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU4-16P-201ENST00000364737 141 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU6-546P-201ENST00000383991 107 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 SNORD116-22-201ENST00000384430 92 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 RNU6-733P-201ENST00000410759 104 ntBASIC2.85□□□□□ -1.95
CCDC39Q9UFE4 CYP2C59P-201ENST00000457790 269 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 240 ms