Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-453P-201ENST00000516819 85 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 Y_RNA.714-201ENST00000517065 90 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 AC100767.1-201ENST00000528178 123 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.19□□□□□ -2.22
NKX3-1Q99801 MIR4498-201ENST00000577599 66 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 U8.1-201ENST00000362843 134 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.65-201ENST00000362846 100 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 RNU6-268P-201ENST00000364174 107 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.229-201ENST00000364347 113 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.269-201ENST00000364685 89 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.307-201ENST00000365022 117 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.350-201ENST00000365409 98 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.447-201ENST00000384184 113 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 MIR452-201ENST00000385020 85 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 Y_RNA.587-201ENST00000391210 103 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 RNU7-149P-201ENST00000516739 59 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.18□□□□□ -2.22
NKX3-1Q99801 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.18□□□□□ -2.22
NKX3-1Q99801 uc_338.4-201ENST00000616635 176 ntBASIC1.18□□□□□ -2.22
NKX3-1Q99801 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
NKX3-1Q99801 Y_RNA.60-201ENST00000362831 98 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 RNU6-653P-201ENST00000363074 106 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 Y_RNA.292-201ENST00000364904 97 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 Y_RNA.304-201ENST00000365011 112 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 SNORA8.3-201ENST00000384679 139 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 snosnR66.1-201ENST00000391095 99 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 RNA5SP496-201ENST00000391240 109 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 AL451046.2-201ENST00000403074 277 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 snoU13.25-201ENST00000458945 104 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.17□□□□□ -2.22
NKX3-1Q99801 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.17□□□□□ -2.22
NKX3-1Q99801 Y_RNA.676-201ENST00000516393 96 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 SNORA18.7-201ENST00000516910 131 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 GHRLOS.1-201ENST00000610995 70 ntBASIC1.17□□□□□ -2.22
NKX3-1Q99801 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.17□□□□□ -2.22
NKX3-1Q99801 MIR26B-201ENST00000362251 77 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 MIR337-201ENST00000362281 93 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 SNORA7.1-201ENST00000363750 139 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 RNU6-442P-201ENST00000383968 104 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 MIR548H3-201ENST00000408771 118 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.16□□□□□ -2.22
NKX3-1Q99801 HMGN2P32-201ENST00000444648 269 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.16□□□□□ -2.22
NKX3-1Q99801 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 RNU6-322P-201ENST00000516010 103 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 RN7SKP88-201ENST00000516847 250 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AC090821.2-201ENST00000523552 176 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AL160236.1-201ENST00000556317 195 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AC087685.1-201ENST00000587507 141 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 BX284668.6-201ENST00000606899 438 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 7SK.8-201ENST00000612110 250 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 AL442067.1-201ENST00000613261 223 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 7SK.11-201ENST00000615477 250 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 Pinc.1-201ENST00000616452 154 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 7SK.13-201ENST00000622040 250 ntBASIC1.16□□□□□ -2.22
NKX3-1Q99801 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
NKX3-1Q99801 AL442644.1-201ENST00000454390 3105 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 Y_RNA.20-201ENST00000362479 113 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 Y_RNA.486-201ENST00000384398 107 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 MIR150-201ENST00000385048 84 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 MIR136-201ENST00000385207 82 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 MIR802-201ENST00000390235 94 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 TRMT112P2-201ENST00000512910 132 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 Y_RNA.666-201ENST00000516187 112 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 RNU6-111P-201ENST00000517179 105 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 MIR3192-201ENST00000584920 77 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 AL096861.1-201ENST00000610899 123 ntBASIC1.15□□□□□ -2.23
NKX3-1Q99801 Y_RNA.4-201ENST00000362333 112 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 RNA5SP327-201ENST00000362494 101 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 RNY4P28-201ENST00000365281 93 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 MIR758-201ENST00000390227 88 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 SNORD28B-201ENST00000390993 75 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 SNORD58.1-201ENST00000391313 66 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 SNORD123-201ENST00000459473 70 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 RPL30P7-201ENST00000479312 323 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 RN7SKP164-201ENST00000516138 266 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 SNORD77.4-201ENST00000516158 81 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 RNU6-561P-201ENST00000516222 102 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 SNORA74.3-201ENST00000517108 154 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
NKX3-1Q99801 MIR4421-201ENST00000578133 69 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 MIR4781-201ENST00000585250 76 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 AL359821.1-201ENST00000605519 182 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 AC006441.5-201ENST00000612680 209 ntBASIC1.14□□□□□ -2.23
NKX3-1Q99801 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.14□□□□□ -2.23
NKX3-1Q99801 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.13□□□□□ -2.23
NKX3-1Q99801 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
NKX3-1Q99801 SNRPGP8-201ENST00000454064 226 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 RNU1-123P-201ENST00000458950 160 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 AC048334.1-201ENST00000477975 159 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 AC004223.1-201ENST00000479840 271 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 AC005840.1-201ENST00000498412 377 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 RNU6-1023P-201ENST00000516137 106 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 MIR548AR-201ENST00000582191 57 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 AC015726.2-201ENST00000620112 122 ntBASIC1.13□□□□□ -2.23
NKX3-1Q99801 Y_RNA.308-201ENST00000365043 101 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 Y_RNA.327-201ENST00000365201 102 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 RNU6-1138P-201ENST00000365359 106 ntBASIC1.12□□□□□ -2.23
NKX3-1Q99801 SNORD38C-201ENST00000384381 69 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms