Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.52□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.118-201ENST00000363300 101 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 SNORD18A-201ENST00000363753 72 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 SNORD45.3-201ENST00000363836 72 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.242-201ENST00000364473 110 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.813-201ENST00000364639 102 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.376-201ENST00000365638 108 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 SNORA36.2-201ENST00000384004 127 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 SNORA26.5-201ENST00000391215 123 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 RNU2-13P-201ENST00000515909 113 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 RNU6-976P-201ENST00000516086 111 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 MIR6515-201ENST00000619843 57 ntBASIC0.51□□□□□ -2.33
CCDC40Q4G0X9 MIR377-201ENST00000362145 69 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 RNU6-580P-201ENST00000365159 107 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.354-201ENST00000365448 111 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 RNY1P8-201ENST00000383970 114 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.471-201ENST00000384312 102 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.526-201ENST00000384572 110 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 RNU6-1237P-201ENST00000384777 107 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 MT-TN-201ENST00000387400 73 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 RNU6-130P-201ENST00000411112 103 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 RNU6-847P-201ENST00000411115 108 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 snoU13.21-201ENST00000459368 105 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 snoU13.18-201ENST00000459483 104 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 SEPT14P8-201ENST00000508026 178 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 SCARNA8-201ENST00000515924 131 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 SNORD113-5-201ENST00000607261 78 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 AC243994.1-201ENST00000618627 109 ntBASIC0.5□□□□□ -2.33
CCDC40Q4G0X9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
CCDC40Q4G0X9 RNU6-205P-201ENST00000390858 107 ntBASIC0.49□□□□□ -2.33
CCDC40Q4G0X9 RNU6-1248P-201ENST00000391096 64 ntBASIC0.49□□□□□ -2.33
CCDC40Q4G0X9 AC114737.2-201ENST00000421583 173 ntBASIC0.49□□□□□ -2.33
CCDC40Q4G0X9 PART1_1.1-201ENST00000611761 217 ntBASIC0.49□□□□□ -2.33
CCDC40Q4G0X9 RNU6-125P-201ENST00000384505 107 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.529-201ENST00000384586 119 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 AC092628.1-201ENST00000436250 252 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 RNU6-191P-201ENST00000516295 94 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 RNU6-875P-201ENST00000516488 106 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 AC040926.1-201ENST00000530195 238 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 AP000753.3-201ENST00000604083 169 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.303-201ENST00000364998 94 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 MIR573-201ENST00000384964 99 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 RNU6-177P-201ENST00000411257 104 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 AC236972.2-201ENST00000434979 310 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 AC006157.1-201ENST00000611750 366 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 AC243829.3-201ENST00000622177 108 ntBASIC0.47□□□□□ -2.33
CCDC40Q4G0X9 Y_RNA.222-201ENST00000364264 102 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.315-201ENST00000365117 102 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.418-201ENST00000384029 102 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 MIR140-201ENST00000385282 100 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 SNORD83.1-201ENST00000411362 77 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 RN7SKP12-201ENST00000516275 143 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 RNU7-25P-201ENST00000516544 62 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 MIR4264-201ENST00000583520 66 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 AL512605.2-201ENST00000592972 256 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 AC122108.2-201ENST00000611946 526 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 uc_338.4-201ENST00000616635 176 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 AC022140.2-201ENST00000623500 188 ntBASIC0.46□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.58-201ENST00000362807 102 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.154-201ENST00000363624 102 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNU6-899P-201ENST00000363947 107 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNY1-201ENST00000364228 113 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.263-201ENST00000364659 114 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNY3P1-201ENST00000365085 102 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNU6-934P-201ENST00000365154 107 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.356-201ENST00000365475 113 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.547-201ENST00000384654 119 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 MIR520F-201ENST00000384824 87 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 MIR520H-201ENST00000385126 88 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNU6-308P-201ENST00000390957 107 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 AC015818.7-201ENST00000428754 109 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 AC087499.7-201ENST00000441958 109 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNU6-977P-201ENST00000516411 103 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 RNU6-1046P-201ENST00000516538 107 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
CCDC40Q4G0X9 AC090844.1-201ENST00000422019 156 ntBASIC0.44□□□□□ -2.34
CCDC40Q4G0X9 MIR4771-2-201ENST00000577758 74 ntBASIC0.44□□□□□ -2.34
CCDC40Q4G0X9 MIR4771-1-201ENST00000582617 74 ntBASIC0.44□□□□□ -2.34
CCDC40Q4G0X9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.44□□□□□ -2.34
CCDC40Q4G0X9 RNU6-763P-201ENST00000390865 106 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 RNU6-1009P-201ENST00000390996 107 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 MIR548O-201ENST00000408583 114 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 snoU13.16-201ENST00000459350 104 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 RNU6-1170P-201ENST00000515974 106 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 RNU6-475P-201ENST00000516073 104 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 RNU6-764P-201ENST00000516396 105 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 LARP7P1-201ENST00000605576 316 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 AC007485.1-201ENST00000616755 206 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 AC112487.2-201ENST00000637950 304 ntBASIC0.43□□□□□ -2.34
CCDC40Q4G0X9 SNORD113-8-201ENST00000363497 74 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 RNU6-1205P-201ENST00000363625 106 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.197-201ENST00000364004 102 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 RNU6-144P-201ENST00000383951 107 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 185.9 ms