Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR5588-201ENST00000581890 63 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC002984.1-201ENST00000591692 448 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC006441.5-201ENST00000612680 209 ntBASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.5□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-832P-201ENST00000363319 107 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-442P-201ENST00000383968 104 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR767-201ENST00000390228 109 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNA5SP38-201ENST00000410750 119 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MRPL35P3-201ENST00000421557 364 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC092185.1-201ENST00000491371 97 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-341P-201ENST00000516973 96 ntBASIC3.49□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-661P-201ENST00000362409 107 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU1-105P-201ENST00000363470 161 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.155-201ENST00000363632 101 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.440-201ENST00000384120 114 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-24P-201ENST00000384440 107 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR522-201ENST00000385071 87 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR591-201ENST00000385290 95 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-733P-201ENST00000410759 104 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-321P-201ENST00000410912 106 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AL353689.1-201ENST00000438895 199 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-795P-201ENST00000516323 103 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU2-35P-201ENST00000516446 142 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU7-25P-201ENST00000516544 62 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SNORA4-201ENST00000584302 138 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 snoU13.31-201ENST00000607291 104 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC012531.4-201ENST00000616509 177 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 CTSLP2-204ENST00000629029 392 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AC095038.3-201ENST00000634439 195 ntBASIC3.48□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-1125P-201ENST00000363601 107 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SNORD14E-201ENST00000364009 85 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.267-201ENST00000364679 109 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Y_RNA.351-201ENST00000365436 96 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-1083P-201ENST00000384022 107 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU6-409P-201ENST00000384114 104 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AL445646.1-201ENST00000431784 216 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 RNU7-171P-201ENST00000459581 62 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 SNORA18.7-201ENST00000516910 131 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR3605-201ENST00000583214 100 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR1248-201ENST00000629190 106 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR6079-201ENST00000635807 62 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 MIR4662A-201ENST00000637499 67 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 AL021368.2-201ENST00000606125 5352 ntBASIC3.47□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
SENP3-EIF4A1A0A087X0R7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-363P-201ENST00000362895 105 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.360-201ENST00000365512 102 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.437-201ENST00000384113 113 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORA18-201ENST00000384416 132 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR577-201ENST00000385196 96 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU2-11P-201ENST00000459191 187 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-965P-201ENST00000516721 96 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD36C-201ENST00000516733 66 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR3618-201ENST00000580330 88 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR26A1-201ENST00000362205 77 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-19-201ENST00000363098 82 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-18-201ENST00000363293 82 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD115-17-201ENST00000364612 82 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORD45B-201ENST00000364617 72 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 Y_RNA.547-201ENST00000384654 119 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-402P-201ENST00000410678 103 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNA5SP385-201ENST00000515947 110 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SNORA9.3-201ENST00000516383 129 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC087741.2-201ENST00000619415 172 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC096644.4-201ENST00000563417 2912 ntBASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.45□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 snoU2-30.2-201ENST00000362805 70 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU6-60P-201ENST00000364792 103 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNA5SP21-201ENST00000410917 96 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC123900.1-201ENST00000420390 96 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC087499.4-201ENST00000448505 178 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 RNU7-128P-201ENST00000517247 62 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AP002004.2-201ENST00000531656 154 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 AC091932.4-201ENST00000623386 200 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 MIR203B-201ENST00000636080 86 ntBASIC3.44□□□□□ -1.86
SENP3-EIF4A1A0A087X0R7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 236.9 ms