Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU1-96P-201ENST00000364163 162 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1189P-201ENST00000383958 107 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNU1-138P-201ENST00000384093 164 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNY1P6-201ENST00000384193 109 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 Y_RNA.601-201ENST00000410500 113 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 HMGN2P18-201ENST00000450680 270 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNU7-61P-201ENST00000515897 61 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1291P-201ENST00000516591 104 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 U2.20-201ENST00000613956 192 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 MIR1248-201ENST00000629190 106 ntBASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC39Q9UFE4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 SNORA33-201ENST00000363664 130 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 SNORA4.2-201ENST00000365313 147 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 RNU6-242P-201ENST00000384359 107 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 MIR1253-201ENST00000408273 105 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 MIR548O-201ENST00000408583 114 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 AP001486.1-201ENST00000463339 476 ntBASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC39Q9UFE4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU6-787P-201ENST00000384032 107 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU6-220P-201ENST00000390919 107 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU6-644P-201ENST00000391155 98 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1186P-201ENST00000410429 97 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RPL23AP83-201ENST00000434984 473 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 AL353689.1-201ENST00000438895 199 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU6-965P-201ENST00000516721 96 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNU7-70P-201ENST00000516941 66 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 RNA5SP490-201ENST00000517141 136 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 AC087685.1-201ENST00000587507 141 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 U7.3-201ENST00000616123 62 ntBASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC39Q9UFE4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 MIR126-201ENST00000362291 85 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU1-72P-201ENST00000362976 153 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1125P-201ENST00000363601 107 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU1-133P-201ENST00000364867 167 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU6-1296P-201ENST00000383879 107 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 SNORA80E-201ENST00000384744 137 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 COTL1P1-201ENST00000422309 375 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 AC104389.3-201ENST00000445629 235 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU6-162P-201ENST00000516228 103 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU2-35P-201ENST00000516446 142 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU7-6P-201ENST00000516845 62 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 RNU6-586P-201ENST00000517265 104 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 MIR4305-201ENST00000583252 102 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 AC018630.2-201ENST00000534866 2403 ntBASIC2.93□□□□□ -1.94
CCDC39Q9UFE4 MIR483-201ENST00000385070 76 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RNU6-279P-201ENST00000391297 101 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RPS15AP28-201ENST00000435088 386 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RNU1-131P-201ENST00000458943 161 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RN7SKP132-201ENST00000516001 208 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RNU7-99P-201ENST00000516271 62 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 RNU7-128P-201ENST00000517247 62 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 AL359075.3-201ENST00000613288 217 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 AC012531.4-201ENST00000616509 177 ntBASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
CCDC39Q9UFE4 Y_RNA.10-201ENST00000362371 110 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 Y_RNA.37-201ENST00000362606 108 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNU6-859P-201ENST00000362728 107 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 SNORD115-28-201ENST00000363931 81 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNU6-675P-201ENST00000384236 104 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 Y_RNA.531-201ENST00000384589 121 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 MIR522-201ENST00000385071 87 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AL451046.2-201ENST00000403074 277 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC096949.1-201ENST00000412047 152 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC004941.2-201ENST00000427009 228 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 FTH1P12-201ENST00000432137 551 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 HMGN2P34-201ENST00000437647 269 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 SNORD109B-201ENST00000458961 67 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 SNORD109A-201ENST00000459128 67 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC113410.1-201ENST00000505029 247 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 SNORA4.4-201ENST00000515921 135 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNU6-795P-201ENST00000516323 103 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNA5SP282-201ENST00000516355 108 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNU7-25P-201ENST00000516544 62 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 SNORD36C-201ENST00000516733 66 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 RNU6-856P-201ENST00000516959 98 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 Y_RNA.714-201ENST00000517065 90 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 GTF3AP2-201ENST00000557014 266 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 MIR4446-201ENST00000578505 67 ntBASIC2.91□□□□□ -1.94
CCDC39Q9UFE4 AC006441.5-201ENST00000612680 209 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 159.7 ms