Protein–RNA interactions for Protein: P08247

SYP, Synaptophysin, humanhuman

Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYPP08247 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.59□□□□□ -1.99
SYPP08247 AC005786.1-201ENST00000588553 154 ntBASIC2.59□□□□□ -1.99
SYPP08247 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
SYPP08247 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.58□□□□□ -2
SYPP08247 Y_RNA.265-201ENST00000364677 108 ntBASIC2.58□□□□□ -2
SYPP08247 Y_RNA.336-201ENST00000365307 109 ntBASIC2.58□□□□□ -2
SYPP08247 Y_RNA.547-201ENST00000384654 119 ntBASIC2.58□□□□□ -2
SYPP08247 MIR27B-201ENST00000385129 97 ntBASIC2.58□□□□□ -2
SYPP08247 MIR29C-201ENST00000385231 88 ntBASIC2.58□□□□□ -2
SYPP08247 SNORA11.4-201ENST00000408823 129 ntBASIC2.58□□□□□ -2
SYPP08247 RNU4-53P-201ENST00000410828 140 ntBASIC2.58□□□□□ -2
SYPP08247 AC007064.1-201ENST00000412238 351 ntBASIC2.58□□□□□ -2
SYPP08247 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.58□□□□□ -2
SYPP08247 CALM2P4-201ENST00000430810 426 ntBASIC2.58□□□□□ -2
SYPP08247 MIR3605-201ENST00000583214 100 ntBASIC2.58□□□□□ -2
SYPP08247 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SYPP08247 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
SYPP08247 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SYPP08247 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.57□□□□□ -2
SYPP08247 RNU6-1298P-201ENST00000362456 101 ntBASIC2.57□□□□□ -2
SYPP08247 Y_RNA.37-201ENST00000362606 108 ntBASIC2.57□□□□□ -2
SYPP08247 Y_RNA.366-201ENST00000365540 102 ntBASIC2.57□□□□□ -2
SYPP08247 RNU6-1189P-201ENST00000383958 107 ntBASIC2.57□□□□□ -2
SYPP08247 RNU1-109P-201ENST00000383960 147 ntBASIC2.57□□□□□ -2
SYPP08247 Y_RNA.528-201ENST00000384575 108 ntBASIC2.57□□□□□ -2
SYPP08247 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.57□□□□□ -2
SYPP08247 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.57□□□□□ -2
SYPP08247 RPS26P48-201ENST00000491713 339 ntBASIC2.57□□□□□ -2
SYPP08247 SNORA9.3-201ENST00000516383 129 ntBASIC2.57□□□□□ -2
SYPP08247 AC004486.1-201ENST00000546846 233 ntBASIC2.57□□□□□ -2
SYPP08247 MIR4769-201ENST00000584126 77 ntBASIC2.57□□□□□ -2
SYPP08247 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.57□□□□□ -2
SYPP08247 AL137067.1-201ENST00000615933 120 ntBASIC2.57□□□□□ -2
SYPP08247 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SYPP08247 AL355596.1-201ENST00000565399 3996 ntBASIC2.57□□□□□ -2
SYPP08247 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.56□□□□□ -2
SYPP08247 SNORD115-28-201ENST00000363931 81 ntBASIC2.56□□□□□ -2
SYPP08247 RNU1-148P-201ENST00000384472 162 ntBASIC2.56□□□□□ -2
SYPP08247 SNORA80E-201ENST00000384744 137 ntBASIC2.56□□□□□ -2
SYPP08247 RNA5SP136-201ENST00000410906 107 ntBASIC2.56□□□□□ -2
SYPP08247 Z98742.3-201ENST00000418637 326 ntBASIC2.56□□□□□ -2
SYPP08247 AC003982.1-202ENST00000469928 248 ntBASIC2.56□□□□□ -2
SYPP08247 MIR8054-201ENST00000620877 86 ntBASIC2.56□□□□□ -2
SYPP08247 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SYPP08247 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.55□□□□□ -2
SYPP08247 RNU6-1019P-201ENST00000364424 107 ntBASIC2.55□□□□□ -2
SYPP08247 SNORA2.2-201ENST00000365473 135 ntBASIC2.55□□□□□ -2
SYPP08247 RNU6-440P-201ENST00000390882 105 ntBASIC2.55□□□□□ -2
SYPP08247 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.55□□□□□ -2
SYPP08247 BX510359.4-201ENST00000423750 193 ntBASIC2.55□□□□□ -2
SYPP08247 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.55□□□□□ -2
SYPP08247 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.55□□□□□ -2
SYPP08247 IGKV3-31-201ENST00000523109 329 ntBASIC2.55□□□□□ -2
SYPP08247 AC084364.2-201ENST00000546924 395 ntBASIC2.55□□□□□ -2
SYPP08247 MIR4635-201ENST00000583759 79 ntBASIC2.55□□□□□ -2
SYPP08247 AC069114.2-201ENST00000604699 304 ntBASIC2.55□□□□□ -2
SYPP08247 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.55□□□□□ -2
SYPP08247 RNU6-938P-201ENST00000411285 103 ntBASIC2.54□□□□□ -2
SYPP08247 AL356320.1-201ENST00000429616 163 ntBASIC2.54□□□□□ -2
SYPP08247 AL445646.1-201ENST00000431784 216 ntBASIC2.54□□□□□ -2
SYPP08247 STAG3L5P-204ENST00000443759 179 ntBASIC2.54□□□□□ -2
SYPP08247 HMGN2P32-201ENST00000444648 269 ntBASIC2.54□□□□□ -2
SYPP08247 RNU7-26P-201ENST00000458980 63 ntBASIC2.54□□□□□ -2
SYPP08247 SNORD36C-201ENST00000516733 66 ntBASIC2.54□□□□□ -2
SYPP08247 MIR4679-2-201ENST00000578358 77 ntBASIC2.54□□□□□ -2
SYPP08247 MIR4648-201ENST00000580107 72 ntBASIC2.54□□□□□ -2
SYPP08247 AC008555.8-201ENST00000623602 2168 ntBASIC2.54□□□□□ -2
SYPP08247 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.53□□□□□ -2
SYPP08247 ZNF720P1-201ENST00000562403 1939 ntBASIC2.53□□□□□ -2
SYPP08247 MIRLET7C-201ENST00000362160 84 ntBASIC2.53□□□□□ -2
SYPP08247 MIR570-201ENST00000384917 97 ntBASIC2.53□□□□□ -2
SYPP08247 COX6CP6-201ENST00000490840 228 ntBASIC2.53□□□□□ -2
SYPP08247 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.53□□□□□ -2
SYPP08247 RNU6-240P-201ENST00000516098 97 ntBASIC2.53□□□□□ -2
SYPP08247 RNA5SP320-201ENST00000516263 124 ntBASIC2.53□□□□□ -2
SYPP08247 SNORA31.10-201ENST00000516482 106 ntBASIC2.53□□□□□ -2
SYPP08247 MIR3126-201ENST00000577443 74 ntBASIC2.53□□□□□ -2
SYPP08247 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
SYPP08247 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.53□□□□□ -2
SYPP08247 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
SYPP08247 RNA5SP289-201ENST00000362332 137 ntBASIC2.52□□□□□ -2.01
SYPP08247 RNU1-91P-201ENST00000364746 163 ntBASIC2.52□□□□□ -2.01
SYPP08247 Y_RNA.281-201ENST00000364774 94 ntBASIC2.52□□□□□ -2.01
SYPP08247 Y_RNA.440-201ENST00000384120 114 ntBASIC2.52□□□□□ -2.01
SYPP08247 AC114811.1-201ENST00000507207 168 ntBASIC2.52□□□□□ -2.01
SYPP08247 RPPH1-2P-201ENST00000516688 293 ntBASIC2.52□□□□□ -2.01
SYPP08247 RNA5SP137-201ENST00000516833 135 ntBASIC2.52□□□□□ -2.01
SYPP08247 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.52□□□□□ -2.01
SYPP08247 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
SYPP08247 Z82195.2-201ENST00000612348 18351 ntBASIC2.52□□□□□ -2.01
SYPP08247 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SYPP08247 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SYPP08247 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
SYPP08247 RNU6-349P-201ENST00000362402 107 ntBASIC2.51□□□□□ -2.01
SYPP08247 RNU6-1116P-201ENST00000517269 99 ntBASIC2.51□□□□□ -2.01
SYPP08247 AP003484.1-201ENST00000530974 250 ntBASIC2.51□□□□□ -2.01
SYPP08247 AC007012.1-201ENST00000567192 175 ntBASIC2.51□□□□□ -2.01
SYPP08247 MIR5094-201ENST00000578766 85 ntBASIC2.51□□□□□ -2.01
SYPP08247 SNORA28-201ENST00000606769 126 ntBASIC2.51□□□□□ -2.01
SYPP08247 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 239.4 ms